Os03g0138100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os03g0138100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.82 | 0.219 | 10.7 | 0.653 | 0.117 | 0.583 | -0.206 | 0.794 | 0.233 | 5.29 | 21.01 | 1405 | -- | -- |
| 22.7 | 0.222 | 10.7 | 0.545 | 0.104 | 0.458 | -0.235 | -- | 0.177 | 5.01 | 22 | 1304 | -- | -- |
| 21.93 | 0.218 | 10.7 | 0.648 | 0.114 | 0.584 | -- | 0.776 | 0.232 | 5.25 | 21 | 1384 | -- | -- |
| 22.58 | 0.221 | 10.7 | 0.477 | 0.121 | 0.459 | -- | -- | 0.166 | 5.73 | 22.1 | 2414 | -- | -- |
| 22.6 | 0.221 | 10.7 | 0.644 | -- | 0.586 | -- | 0.747 | 0.232 | -- | 21.06 | 1339 | -- | -- |
| 29.63 | 0.255 | 10.7 | 0.69 | 0.129 | -- | -0.234 | -- | 0.325 | 5.01 | -- | -- | -- | -- |
| 29.76 | 0.255 | 10.7 | 0.69 | 0.128 | -- | -- | -- | 0.326 | 4.81 | -- | -- | -- | -- |
| 23.25 | 0.225 | 10.7 | 0.481 | -- | 0.47 | -- | -- | 0.166 | -- | 22.03 | 2481 | -- | -- |
| 26.44 | 0.24 | 10.8 | -- | 0.116 | 0.655 | -- | -- | 0.0492 | 5.89 | 21.6 | 3861 | -- | -- |
| 30.62 | 0.259 | 10.7 | 0.695 | -- | -- | -- | -- | 0.329 | -- | -- | -- | -- | -- |
| 42.31 | 0.304 | 10.7 | -- | 0.14 | -- | -- | -- | 0.249 | 4.66 | -- | -- | -- | -- |
| 27.15 | 0.243 | 10.8 | -- | -- | 0.665 | -- | -- | 0.0485 | -- | 21.7 | 3904 | -- | -- |
| 43.36 | 0.307 | 10.7 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 4 | 22.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 60 | 22.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 67 | 22.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 73 | 22.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 76 | 22.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 107 | 22.59 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 138 | 22.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 149 | 22.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 235 | 22.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 22 |
| 241 | 22.69 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 348 | 22.75 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 380 | 22.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 433 | 22.81 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 442 | 22.82 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 444 | 22.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 481 | 22.85 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 510 | 22.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 545 | 22.89 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 643 | 22.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 661 | 22.96 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 676 | 22.97 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 699 | 22.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 781 | 23.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 803 | 23.04 | wind | 9 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 901 | 23.08 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |