Os01g0956600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0956600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 325.02 | 0.847 | 5.92 | -2.77 | 0.625 | 1.74 | 0.0788 | -1.9 | -0.992 | 0.982 | 25.57 | 1337 | -- | -- |
| 326.13 | 0.841 | 5.87 | -2.24 | 0.586 | 1.62 | 0.0176 | -- | -0.912 | 1.04 | 25.35 | 1295 | -- | -- |
| 325.03 | 0.84 | 5.92 | -2.76 | 0.621 | 1.74 | -- | -1.87 | -0.986 | 0.98 | 25.6 | 1328 | -- | -- |
| 326.03 | 0.841 | 5.86 | -2.26 | 0.584 | 1.59 | -- | -- | -0.873 | 1.02 | 25.54 | 1284 | -- | -- |
| 339.32 | 0.858 | 5.89 | -2.73 | -- | 2.14 | -- | -1.87 | -1.05 | -- | 24.54 | 1138 | -- | -- |
| 424.86 | 0.966 | 5.82 | -1.73 | 0.839 | -- | 0.322 | -- | -0.73 | 1.23 | -- | -- | -- | -- |
| 425.29 | 0.966 | 5.83 | -1.74 | 0.838 | -- | -- | -- | -0.732 | 1.22 | -- | -- | -- | -- |
| 340.32 | 0.859 | 5.9 | -2.3 | -- | 1.96 | -- | -- | -0.982 | -- | 24.38 | 1142 | -- | -- |
| 449.39 | 0.987 | 5.76 | -- | 0.624 | 1.09 | -- | -- | -0.447 | 0.848 | 27.8 | 1269 | -- | -- |
| 468.74 | 1.01 | 5.81 | -1.71 | -- | -- | -- | -- | -0.715 | -- | -- | -- | -- | -- |
| 505.47 | 1.05 | 5.78 | -- | 0.809 | -- | -- | -- | -0.537 | 1.14 | -- | -- | -- | -- |
| 470.15 | 1.01 | 5.8 | -- | -- | 1.37 | -- | -- | -0.619 | -- | 25.3 | 1132 | -- | -- |
| 546.04 | 1.09 | 5.77 | -- | -- | -- | -- | -- | -0.525 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 307.55 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 2 | 308.09 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 4 | 308.94 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 5 | 309.01 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 12 | 309.93 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 16 | 310.09 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 29 | 312.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 7 |
| 33 | 312.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 60 | 315.71 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 64 | 315.94 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 19 |
| 79 | 317.18 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 85 | 317.56 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 94 | 317.79 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 109 | 318.49 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 146 | 319.69 | wind | 9 | 43200 | < th | dose independent | sin | 11 | NA |
| 147 | 319.69 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 151 | 319.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 161 | 319.97 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 163 | 319.98 | wind | 7 | 43200 | > th | dose dependent | sin | 11 | NA |
| 175 | 320.23 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 180 | 320.28 | wind | 5 | 43200 | > th | dose dependent | sin | 5 | NA |
| 193 | 320.53 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 196 | 320.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 199 | 320.64 | wind | 9 | 43200 | > th | dose independent | sin | 11 | NA |
| 215 | 320.86 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 227 | 321.02 | wind | 5 | 43200 | > th | dose independent | sin | 4 | NA |
| 231 | 321.06 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 250 | 321.25 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 274 | 321.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 275 | 321.64 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 291 | 321.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 295 | 321.90 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 304 | 322.01 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 323 | 322.17 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 333 | 322.26 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 338 | 322.30 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 345 | 322.36 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 384 | 322.57 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 412 | 322.72 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 431 | 322.79 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 474 | 322.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 476 | 322.92 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 496 | 323.05 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 510 | 323.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 535 | 323.16 | temperature | 10 | 1440 | > th | dose dependent | sin | 0 | NA |
| 548 | 323.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 563 | 323.26 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 575 | 323.33 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 603 | 323.42 | wind | 7 | 43200 | < th | dose independent | sin | 7 | NA |
| 716 | 323.89 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 796 | 324.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 820 | 324.22 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 918 | 324.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 921 | 324.58 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |