BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0950800 Os01g0950800|AK119473
(210 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0950800 Conserved hypothetical protein 390 e-109
Os10g0580500 Conserved hypothetical protein 245 1e-65
Os11g0210000 Conserved hypothetical protein 92 3e-19
>Os01g0950800 Conserved hypothetical protein
Length = 210
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/210 (91%), Positives = 193/210 (91%)
Query: 1 MAGSEDLSGLTASLGELHVESSALKDSEISHPGNAFXXXXXXXXXXXXXXXXXPGHGSTL 60
MAGSEDLSGLTASLGELHVESSALKDSEISHPGNAF PGHGSTL
Sbjct: 1 MAGSEDLSGLTASLGELHVESSALKDSEISHPGNAFDDDAIADDDVWDDVSDSPGHGSTL 60
Query: 61 DREWAHRQNQFHKMGYRDGIAEGQKDIAQEGFNVGFGQSVHVGYKWGLVRGITSALASLP 120
DREWAHRQNQFHKMGYRDGIAEGQKDIAQEGFNVGFGQSVHVGYKWGLVRGITSALASLP
Sbjct: 61 DREWAHRQNQFHKMGYRDGIAEGQKDIAQEGFNVGFGQSVHVGYKWGLVRGITSALASLP 120
Query: 121 DNLKEKMFPNVQCRGQLQDLNNSVQEISAEDALQMFHESILRSSHSSEEPDATLKRATDS 180
DNLKEKMFPNVQCRGQLQDLNNSVQEISAEDALQMFHESILRSSHSSEEPDATLKRATDS
Sbjct: 121 DNLKEKMFPNVQCRGQLQDLNNSVQEISAEDALQMFHESILRSSHSSEEPDATLKRATDS 180
Query: 181 SRLQSLSKDLVILLHECPDVKVSEELTGDS 210
SRLQSLSKDLVILLHECPDVKVSEELTGDS
Sbjct: 181 SRLQSLSKDLVILLHECPDVKVSEELTGDS 210
>Os10g0580500 Conserved hypothetical protein
Length = 165
Score = 245 bits (626), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 115/121 (95%), Positives = 119/121 (98%)
Query: 54 PGHGSTLDREWAHRQNQFHKMGYRDGIAEGQKDIAQEGFNVGFGQSVHVGYKWGLVRGIT 113
PGHGSTLDREW HRQNQFHKMGYRDGIAEGQKDIAQEGFNVGFGQSVHVGYKWGLVRGIT
Sbjct: 45 PGHGSTLDREWVHRQNQFHKMGYRDGIAEGQKDIAQEGFNVGFGQSVHVGYKWGLVRGIT 104
Query: 114 SALASLPDNLKEKMFPNVQCRGQLQDLNNSVQEISAEDALQMFHESILRSSHSSEEPDAT 173
SALASLPD+LKEK+ PNVQCRGQLQ+LNNSVQEISAEDALQMFHESIL+SSHSSEEPDAT
Sbjct: 105 SALASLPDSLKEKLLPNVQCRGQLQELNNSVQEISAEDALQMFHESILQSSHSSEEPDAT 164
Query: 174 L 174
L
Sbjct: 165 L 165
>Os11g0210000 Conserved hypothetical protein
Length = 103
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 66/98 (67%), Gaps = 8/98 (8%)
Query: 96 FGQSVHVGYKWGLVRGITSALASLPDNLKEKMFPNVQCRGQLQDLNNSVQEISAEDALQM 155
F S + + I+S AS P L+ K+ GQLQDL NS QE+S++D LQM
Sbjct: 7 FSYSCARIFFFPYTILISSPNAS-PRQLERKI-------GQLQDLKNSAQEVSSDDTLQM 58
Query: 156 FHESILRSSHSSEEPDATLKRATDSSRLQSLSKDLVIL 193
FHESIL+SSHS EEP ATLKRATDSSRLQ LS+D+ +L
Sbjct: 59 FHESILQSSHSLEEPHATLKRATDSSRLQFLSEDVAML 96
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,182,665
Number of extensions: 209467
Number of successful extensions: 393
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 3
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)