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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0950800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.64 (0.0196) R2 : 0.508
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.75 (0.0918) R2dE : 0.417 R2E : 0.465
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.227 (0.0423) R2dN8 : 0.0427 R2N8 : 0.0904
σ : 0.366
deviance : 61.8
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 14.03
memory length : 281
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.54 0.314 8.62 -0.234 0.488 -1.19 -0.38 2.21 -0.211 1.57 20.21 777 -- --
47.58 0.321 8.66 -0.67 0.588 -1.1 -0.261 -- -0.327 2.77 18.02 965 -- --
45.09 0.313 8.62 -0.255 0.488 -1.19 -- 2.03 -0.22 1.58 20.07 776 -- --
47.41 0.321 8.66 -0.66 0.564 -1.29 -- -- -0.315 2.46 15.17 938 -- --
47.2 0.32 8.63 -0.385 -- -1.41 -- 1.89 -0.243 -- 16.9 268 -- --
70.88 0.395 8.71 -1.03 0.494 -- -0.306 -- -0.55 4.2 -- -- -- --
71.14 0.395 8.71 -1.03 0.493 -- -- -- -0.549 4.21 -- -- -- --
49.88 0.329 8.66 -0.709 -- -1.49 -- -- -0.33 -- 14.96 270 -- --
51.96 0.336 8.63 -- 0.555 -1.43 -- -- -0.117 4.03 10.09 8344 -- --
84.27 0.429 8.71 -1.01 -- -- -- -- -0.536 -- -- -- -- --
98.99 0.465 8.69 -- 0.473 -- -- -- -0.434 4.25 -- -- -- --
61.8 0.366 8.64 -- -- -1.75 -- -- -0.227 -- 14.03 281 -- --
111.08 0.492 8.69 -- -- -- -- -- -0.424 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.23 temperature 30 1440 > th dose independent rect. 16 2
2 43.39 temperature 30 1440 < th dose independent rect. 16 2
4 43.84 temperature 20 720 > th dose dependent rect. 12 21
24 44.44 temperature 20 720 > th dose dependent rect. 7 22
42 44.61 temperature 30 1440 < th dose independent rect. 16 8
48 44.65 temperature 30 1440 < th dose independent rect. 16 15
51 44.67 temperature 30 1440 < th dose independent rect. 16 5
62 44.69 temperature 20 720 > th dose dependent no NA NA
65 44.72 temperature 30 1440 < th dose independent rect. 16 13
74 44.78 temperature 30 1440 > th dose independent rect. 11 2
79 44.84 temperature 20 720 > th dose dependent rect. 1 23
99 44.94 temperature 20 720 > th dose dependent rect. 17 23
115 45.11 temperature 30 1440 > th dose independent rect. 11 7
128 45.19 temperature 30 1440 < th dose independent rect. 15 22
130 45.21 temperature 20 720 > th dose dependent rect. 23 23
147 45.23 temperature 20 720 > th dose dependent rect. 21 23
171 45.34 temperature 30 1440 < th dose independent rect. 12 1
196 45.45 temperature 30 1440 > th dose independent rect. 15 22
199 45.46 temperature 30 1440 < th dose independent rect. 11 13
202 45.47 temperature 30 1440 < th dose independent rect. 11 20
211 45.49 temperature 30 1440 < th dose independent rect. 11 8
218 45.49 temperature 30 1440 < th dose independent rect. 11 18
239 45.58 temperature 30 270 < th dose dependent rect. 12 23
256 45.64 temperature 20 720 > th dose dependent sin 15 NA
328 45.77 temperature 30 720 < th dose dependent rect. 9 20
371 45.84 temperature 20 1440 > th dose dependent sin 2 NA
395 45.87 temperature 20 1440 > th dose dependent rect. 23 20
416 45.89 temperature 20 1440 > th dose dependent rect. 3 17
460 45.92 temperature 30 1440 > th dose independent sin 15 NA
463 45.92 temperature 20 1440 > th dose dependent rect. 7 7
491 45.95 temperature 20 1440 > th dose dependent rect. 4 10
591 46.06 temperature 30 1440 < th dose independent sin 15 NA
687 46.21 wind 3 43200 > th dose dependent rect. 20 1
772 46.26 temperature 30 720 < th dose dependent rect. 5 23
902 46.33 wind 7 43200 < th dose dependent rect. 19 3
950 46.35 temperature 30 720 < th dose dependent rect. 3 23