BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0950800 Os01g0950800|AK119473
         (210 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15750.1  | chr3:5335089-5336184 FORWARD LENGTH=200            104   3e-23
AT1G34570.1  | chr1:12655297-12656444 REVERSE LENGTH=209          104   4e-23

>AT3G15750.1 | chr3:5335089-5336184 FORWARD LENGTH=200
          Length = 199

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 71/102 (69%)

Query: 59  TLDREWAHRQNQFHKMGYRDGIAEGQKDIAQEGFNVGFGQSVHVGYKWGLVRGITSALAS 118
            L  E   R+ +FH  GYRDGI  G++ IAQEG+N G+ +SV  GY++GLVRG++SALA 
Sbjct: 43  VLGNENKQRRVKFHSAGYRDGIVAGKEAIAQEGYNFGYKESVLNGYQFGLVRGVSSALAF 102

Query: 119 LPDNLKEKMFPNVQCRGQLQDLNNSVQEISAEDALQMFHESI 160
           LPD L+EK+    + R + Q L++SV  +S E A++ F+E++
Sbjct: 103 LPDELREKLIDKQETREKFQKLHSSVHALSTEVAMKRFYETL 144



>AT1G34570.1 | chr1:12655297-12656444 REVERSE LENGTH=209
          Length = 208

 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 90/153 (58%), Gaps = 9/153 (5%)

Query: 59  TLDREWAHRQNQFHKMGYRDGIAEGQKDIAQEGFNVGFGQSVHVGYKWGLVRGITSALAS 118
            LD E   R+ +FH  GYRDGI  G++ IAQEG+N G+ +SV  GYK+G+VRG++SALA 
Sbjct: 52  VLDNENEQRRVKFHSAGYRDGIVVGKEAIAQEGYNFGYKESVLAGYKFGIVRGVSSALAF 111

Query: 119 LPDNLKEKMFPNVQCRGQLQDLNNSVQEISAEDALQMFHESILRS---SHSSEE-PDATL 174
           LP   +EK+    + R + Q L++SV  +S E A++ F+E++        S EE PD+  
Sbjct: 112 LPVEFREKLIDEQETREKFQKLHSSVHALSTEVAMKQFYETLTTKQGEEKSGEEGPDSCS 171

Query: 175 KRATD-----SSRLQSLSKDLVILLHECPDVKV 202
              +      ++ L S   +L  LL + P ++V
Sbjct: 172 VSGSCSGVNVTADLGSYVTELSSLLDKSPTIEV 204



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,051,335
Number of extensions: 143546
Number of successful extensions: 337
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 2
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)