Os10g0580500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0580500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.83 | 0.289 | 9.35 | -0.525 | 0.494 | -0.717 | -0.397 | 1.22 | -0.277 | 2.4 | 21.87 | 4632 | -- | -- |
| 38.31 | 0.288 | 9.35 | -0.613 | 0.506 | -0.877 | -0.511 | -- | -0.196 | 2.28 | 16.07 | 10640 | -- | -- |
| 38.4 | 0.289 | 9.35 | -0.512 | 0.493 | -0.719 | -- | 1.22 | -0.274 | 2.41 | 21.91 | 4653 | -- | -- |
| 38.68 | 0.29 | 9.36 | -0.63 | 0.519 | -0.878 | -- | -- | -0.213 | 2.42 | 14.57 | 9736 | -- | -- |
| 44.79 | 0.313 | 9.35 | -0.627 | -- | -0.965 | -- | 2.13 | -0.247 | -- | 21.91 | 4653 | -- | -- |
| 51.57 | 0.337 | 9.42 | -1.16 | 0.479 | -- | -0.43 | -- | -0.492 | 2.51 | -- | -- | -- | -- |
| 52.23 | 0.338 | 9.42 | -1.14 | 0.478 | -- | -- | -- | -0.489 | 2.55 | -- | -- | -- | -- |
| 46.63 | 0.319 | 9.38 | -0.916 | -- | -1.14 | -- | -- | -0.325 | -- | 14.57 | 9736 | -- | -- |
| 41.98 | 0.302 | 9.32 | -- | 0.505 | -1.15 | -- | -- | -0.0494 | 2.3 | 10.8 | 23347 | -- | -- |
| 65.64 | 0.379 | 9.42 | -1.12 | -- | -- | -- | -- | -0.477 | -- | -- | -- | -- | -- |
| 86.76 | 0.436 | 9.39 | -- | 0.456 | -- | -- | -- | -0.362 | 2.52 | -- | -- | -- | -- |
| 56.4 | 0.35 | 9.32 | -- | -- | -1.14 | -- | -- | -0.0325 | -- | 9.298 | 21944 | -- | -- |
| 98.99 | 0.464 | 9.39 | -- | -- | -- | -- | -- | -0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.90 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 7 | 36.99 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 11 | 37.01 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 3 |
| 166 | 37.43 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 179 | 37.45 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 192 | 37.47 | temperature | 20 | 4320 | > th | dose dependent | sin | 23 | NA |
| 250 | 37.55 | temperature | 10 | 4320 | > th | dose dependent | sin | 23 | NA |
| 620 | 38.00 | temperature | 30 | 4320 | < th | dose dependent | sin | 23 | NA |
| 745 | 38.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 753 | 38.09 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 761 | 38.10 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 848 | 38.16 | temperature | 20 | 4320 | > th | dose dependent | rect. | 12 | 23 |
| 910 | 38.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 9 |