BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0945600 Os01g0945600|015-050-C03
(308 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0945600 Amino acid/polyamine transporter I family protein 535 e-152
Os01g0945766 Amino acid/polyamine transporter I family protein 272 2e-73
Os01g0945300 Amino acid/polyamine transporter I family protein 268 5e-72
Os01g0945200 Amino acid/polyamine transporter I family protein 262 3e-70
Os01g0607200 Amino acid permease subfamily protein 201 5e-52
Os01g0945100 Amino acid/polyamine transporter I family protein 153 2e-37
Os04g0435100 Amino acid/polyamine transporter I family protein 119 3e-27
>Os01g0945600 Amino acid/polyamine transporter I family protein
Length = 308
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 267/308 (86%), Positives = 267/308 (86%)
Query: 1 MSRSGVVXXXXXXXXXXXXRLHQLGYRQELKRGLSLVSNFAFSFSIISXXXXXXXXXXXX 60
MSRSGVV RLHQLGYRQELKRGLSLVSNFAFSFSIIS
Sbjct: 1 MSRSGVVAMDAAGADADQARLHQLGYRQELKRGLSLVSNFAFSFSIISVLTGVTTTYGTG 60
Query: 61 XXXXXPVSMTLGWLVVSAFNGCVALSMAEICSAYPTSGGLYYWSAKLAGKEWAPLASWVT 120
PVSMTLGWLVVSAFNGCVALSMAEICSAYPTSGGLYYWSAKLAGKEWAPLASWVT
Sbjct: 61 LRYGGPVSMTLGWLVVSAFNGCVALSMAEICSAYPTSGGLYYWSAKLAGKEWAPLASWVT 120
Query: 121 GWFNIVGQWACTTSVDFSXXXXXXXXXXXXTGGANGGGYMASKYVVLAIYSVILILHGLI 180
GWFNIVGQWACTTSVDFS TGGANGGGYMASKYVVLAIYSVILILHGLI
Sbjct: 121 GWFNIVGQWACTTSVDFSLAQLLQVIILLATGGANGGGYMASKYVVLAIYSVILILHGLI 180
Query: 181 NSLPIHWLSWFGQLGAFWNVAGTVDSTSRPFLQIFSLNIYIIRSSDRDLIFVLFVCINTR 240
NSLPIHWLSWFGQLGAFWNVAGTVDSTSRPFLQIFSLNIYIIRSSDRDLIFVLFVCINTR
Sbjct: 181 NSLPIHWLSWFGQLGAFWNVAGTVDSTSRPFLQIFSLNIYIIRSSDRDLIFVLFVCINTR 240
Query: 241 SRCVCADDLDPIGCQGKGEPRVHLYPFQHRKRHGHPPEGLHSSCGVADEPVLCNRLRYIC 300
SRCVCADDLDPIGCQGKGEPRVHLYPFQHRKRHGHPPEGLHSSCGVADEPVLCNRLRYIC
Sbjct: 241 SRCVCADDLDPIGCQGKGEPRVHLYPFQHRKRHGHPPEGLHSSCGVADEPVLCNRLRYIC 300
Query: 301 THGNKSDC 308
THGNKSDC
Sbjct: 301 THGNKSDC 308
>Os01g0945766 Amino acid/polyamine transporter I family protein
Length = 511
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/207 (71%), Positives = 148/207 (71%), Gaps = 10/207 (4%)
Query: 1 MSRSGVVXXXXXXXXXXXXRLHQLGYRQELKRGLSLVSNFAFSFSIISXXXXXXXXXXXX 60
MSRS V RLHQLGYRQELKRGLSLVSNFAFSFSIIS
Sbjct: 1 MSRSVGVTMDAAGADADQARLHQLGYRQELKRGLSLVSNFAFSFSIISVLTGVTTTYGTG 60
Query: 61 XXXXXPVSMTLGWLVVSAFNGCVALSMAEICSAYPTSGGLYYWSAKLAGKEWAPLASWVT 120
PVSMTLGWLVV+AFNGCVALSMAEICSAYPTSGGLYYWSAKLAGKEWAPLASW
Sbjct: 61 LRYGGPVSMTLGWLVVAAFNGCVALSMAEICSAYPTSGGLYYWSAKLAGKEWAPLASW-- 118
Query: 121 GWFNIVGQWACTTSVDFSXXXXXXXXXXXXTGGANGGGYMASKYVVLAIYSVILILHGLI 180
WACTTSVDFS TGGANGGGYMASKYVVLAIYS ILILHGLI
Sbjct: 119 --------WACTTSVDFSLAQLLQVIILLATGGANGGGYMASKYVVLAIYSAILILHGLI 170
Query: 181 NSLPIHWLSWFGQLGAFWNVAGTVDST 207
NSLPI WLSWFGQLGAFWNVAG T
Sbjct: 171 NSLPIRWLSWFGQLGAFWNVAGAFSLT 197
>Os01g0945300 Amino acid/polyamine transporter I family protein
Length = 525
Score = 268 bits (684), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 132/183 (72%), Positives = 142/183 (77%)
Query: 20 RLHQLGYRQELKRGLSLVSNFAFSFSIISXXXXXXXXXXXXXXXXXPVSMTLGWLVVSAF 79
RL QLGY+QELKRGLS++SNFAFSFSIIS PVSMTLGWLVVSAF
Sbjct: 25 RLRQLGYKQELKRGLSVLSNFAFSFSIISVMAGVTTTYSTGLRYGGPVSMTLGWLVVSAF 84
Query: 80 NGCVALSMAEICSAYPTSGGLYYWSAKLAGKEWAPLASWVTGWFNIVGQWACTTSVDFSX 139
NGC+ALSMAEICSAYPTSGGLYYWSAKLAG +WAP ASW+TGWFNI GQWA TTSVDF+
Sbjct: 85 NGCMALSMAEICSAYPTSGGLYYWSAKLAGNDWAPFASWITGWFNITGQWAATTSVDFAL 144
Query: 140 XXXXXXXXXXXTGGANGGGYMASKYVVLAIYSVILILHGLINSLPIHWLSWFGQLGAFWN 199
TGGANGGGYMAS YVVLAIY +L++HG INSLPI LSWFGQLGAFWN
Sbjct: 145 AQLVQVIVLLSTGGANGGGYMASNYVVLAIYGAMLVIHGAINSLPIQCLSWFGQLGAFWN 204
Query: 200 VAG 202
AG
Sbjct: 205 AAG 207
>Os01g0945200 Amino acid/polyamine transporter I family protein
Length = 516
Score = 262 bits (669), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 142/221 (64%), Positives = 154/221 (69%), Gaps = 12/221 (5%)
Query: 20 RLHQLGYRQELKRGLSLVSNFAFSFSIISXXXXXXXXXXXXXXXXXPVSMTLGWLVVSAF 79
RL QLGY+QELKRGLS +SNFAFSF+ IS PVSMTLGWLVV+ F
Sbjct: 15 RLLQLGYKQELKRGLSTLSNFAFSFANISVLTGVTATYNTGLRYGGPVSMTLGWLVVALF 74
Query: 80 NGCVALSMAEICSAYPTSGGLYYWSAKLAGKEWAPLASWVTGWFNIVGQWACTTSVDFSX 139
NGCVALSMAEICSAYPTSGGLYYWSAKLAGKEWA LASWVTGWFNIVGQWA SVDFS
Sbjct: 75 NGCVALSMAEICSAYPTSGGLYYWSAKLAGKEWASLASWVTGWFNIVGQWAAIASVDFSL 134
Query: 140 XXXXXXXXXXXTGGANGGGYMASKYVVLAIYSVILILHGLINSLPIHWLSWFGQLGAFWN 199
TGGANGGGYMASKYVVL I +VILILHG+INSLPI WLS FGQ+GA WN
Sbjct: 135 AQLLQVIILLSTGGANGGGYMASKYVVLVICAVILILHGVINSLPIQWLSLFGQIGAIWN 194
Query: 200 VAGTVDSTSRPFLQIFSLNIYI-IRSSDRDLIFVLFVCINT 239
AG +F L I I + DR + +F +NT
Sbjct: 195 AAG-----------VFVLVILIPAVAKDRPSVEFVFTHLNT 224
>Os01g0607200 Amino acid permease subfamily protein
Length = 532
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 103/184 (55%), Positives = 121/184 (65%), Gaps = 1/184 (0%)
Query: 20 RLHQLGYRQELKRGLSLVSNFAFSFSIISXXXXXXXXXXXXXXXXXPVSMTLGWLVVSAF 79
+L LGY +LKR LSL+SNFA SFSI+S P +M GW + A
Sbjct: 34 KLRLLGYEPQLKRNLSLLSNFAVSFSIVSVLTGITTLFGTGLQFGGPATMVYGWPIAGAM 93
Query: 80 NGCVALSMAEICSAYPTSGGLYYWSAKL-AGKEWAPLASWVTGWFNIVGQWACTTSVDFS 138
V L+MAEICSAYPTSGGLY+WSA+L + + W P ASW+TGWFNIVGQWA TTSVDFS
Sbjct: 94 TLVVGLAMAEICSAYPTSGGLYFWSARLCSHRRWGPFASWLTGWFNIVGQWAVTTSVDFS 153
Query: 139 XXXXXXXXXXXXTGGANGGGYMASKYVVLAIYSVILILHGLINSLPIHWLSWFGQLGAFW 198
TGG NGGGYMASKYVV+A ++ IL+ H INSLPI WLS+FGQ A W
Sbjct: 154 LAQLIQVIILLSTGGNNGGGYMASKYVVIAFHAAILLSHAAINSLPITWLSFFGQFAAAW 213
Query: 199 NVAG 202
N+ G
Sbjct: 214 NMLG 217
>Os01g0945100 Amino acid/polyamine transporter I family protein
Length = 136
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/107 (71%), Positives = 84/107 (78%)
Query: 20 RLHQLGYRQELKRGLSLVSNFAFSFSIISXXXXXXXXXXXXXXXXXPVSMTLGWLVVSAF 79
RLHQLGY+QELKRGLS +SNFAFSF+ IS PVSMTLGWLVV+ F
Sbjct: 21 RLHQLGYKQELKRGLSALSNFAFSFANISVMMGVTTTYNTGLRYGGPVSMTLGWLVVAVF 80
Query: 80 NGCVALSMAEICSAYPTSGGLYYWSAKLAGKEWAPLASWVTGWFNIV 126
N CVALSMAEICSAYPTSGGLYYWSAKLAGK+WA LASWVTGW+ ++
Sbjct: 81 NCCVALSMAEICSAYPTSGGLYYWSAKLAGKQWASLASWVTGWYVLM 127
>Os04g0435100 Amino acid/polyamine transporter I family protein
Length = 530
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 9/206 (4%)
Query: 20 RLHQLGYRQELKRGLSLVSNFAFSFSIISXXXXXXXXXXXXXXXXXPVSMTLGWLVVSAF 79
RL++LGY+QEL+R ++L A SFS ++ P S+ GW+VVS F
Sbjct: 13 RLNELGYKQELRREMTLFKTLAISFSTMTLFTGITPLYGSSLRYTGPASLVWGWVVVSFF 72
Query: 80 NGCVALSMAEICSAYPTSGGLYYWSAKLAGKEWAPLASWVTGWFNIVGQWACTTSVDFSX 139
V +MAEICS++PT+G LY+W+A LAG W PLASW W +G A + F+
Sbjct: 73 TWFVGFAMAEICSSFPTTGSLYFWAAHLAGPVWGPLASWCCAWLEAIGLIAGIGTQAFAG 132
Query: 140 XXXXXXXXXXXTGGANGGGYMASKYVVLAIYSVILILHGLINSLPIHWLSWFGQLGAFWN 199
TG GGGY+ +++ L +Y + + ++N+ + +++ + +W
Sbjct: 133 SQVLQSIILLCTGTNKGGGYLTPRWLFLLMYIGLTFIWAVLNTFALEVIAFLDLISMWWQ 192
Query: 200 VAG---------TVDSTSRPFLQIFS 216
V G V T++P +F+
Sbjct: 193 VIGGTVIVIVLPLVAKTTQPASYVFT 218
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,211,057
Number of extensions: 410424
Number of successful extensions: 879
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 7
Length of query: 308
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 207
Effective length of database: 11,762,187
Effective search space: 2434772709
Effective search space used: 2434772709
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)