Os01g0607200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid permease subfamily protein.
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Os01g0607200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid permease subfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.3 | 0.676 | 8.05 | 1.81 | 0.655 | 1.42 | -1.06 | 1.16 | 0.233 | 2.64 | 1010 | 8586 | -- | -- |
| 209.78 | 0.675 | 8.01 | 2.07 | 0.663 | 1.3 | -1.01 | -- | 0.27 | 2.66 | 1008 | 9701 | -- | -- |
| 210.98 | 0.677 | 8.05 | 1.84 | 0.649 | 1.44 | -- | 1.19 | 0.242 | 2.21 | 1010 | 8565 | -- | -- |
| 213.43 | 0.68 | 8.01 | 2.1 | 0.654 | 1.33 | -- | -- | 0.272 | 2.25 | 1008 | 9661 | -- | -- |
| 236.08 | 0.716 | 8.05 | 1.91 | -- | 1.49 | -- | 1.34 | 0.256 | -- | 1010 | 7370 | -- | -- |
| 273.6 | 0.775 | 8.09 | 1.54 | 0.614 | -- | -1.26 | -- | -0.0508 | 2.7 | -- | -- | -- | -- |
| 278.66 | 0.782 | 8.08 | 1.57 | 0.609 | -- | -- | -- | -0.0424 | 2.14 | -- | -- | -- | -- |
| 238.74 | 0.72 | 8.01 | 2.14 | -- | 1.28 | -- | -- | 0.311 | -- | 1009 | 9106 | -- | -- |
| 318.95 | 0.832 | 8.06 | -- | 0.668 | 1.01 | -- | -- | 0.046 | 2.03 | 1007 | 16417 | -- | -- |
| 300.83 | 0.81 | 8.08 | 1.59 | -- | -- | -- | -- | -0.0279 | -- | -- | -- | -- | -- |
| 343.52 | 0.867 | 8.12 | -- | 0.638 | -- | -- | -- | -0.217 | 2.19 | -- | -- | -- | -- |
| 341.44 | 0.861 | 8.11 | -- | -- | 0.879 | -- | -- | -0.146 | -- | 1004 | 10343 | -- | -- |
| 367.86 | 0.895 | 8.12 | -- | -- | -- | -- | -- | -0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.37 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 3 | 189.52 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 4 | 189.55 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 16 | 190.19 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 18 | 190.25 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 19 | 190.26 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 22 | 190.27 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 29 | 190.73 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 7 |
| 30 | 190.75 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 7 |
| 31 | 190.75 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 7 |
| 35 | 190.95 | radiation | 10.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 48 | 191.30 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 49 | 191.53 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 10 |
| 51 | 191.57 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 10 |
| 52 | 191.57 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 10 |
| 53 | 191.58 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 76 | 191.97 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 83 | 192.11 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 106 | 192.37 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 133 | 192.93 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 144 | 193.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 14 |
| 150 | 193.07 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 151 | 193.07 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 159 | 193.11 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 168 | 193.13 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 208 | 193.32 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 251 | 193.44 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 261 | 193.49 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 264 | 193.50 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 267 | 193.51 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 19 | NA |
| 291 | 193.56 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 19 | NA |
| 293 | 193.56 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 19 | NA |
| 297 | 193.60 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 300 | 193.62 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 352 | 193.76 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 370 | 193.82 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 18 | NA |
| 399 | 193.91 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 425 | 194.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 519 | 194.36 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 521 | 194.37 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 528 | 194.38 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 530 | 194.39 | radiation | 10.0 | 14400 | < th | dose independent | no | NA | NA |
| 531 | 194.39 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 4 | 17 |
| 556 | 194.39 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 561 | 194.40 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 709 | 194.73 | radiation | 40.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 779 | 195.04 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 790 | 195.07 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 800 | 195.09 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 808 | 195.17 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 857 | 195.30 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 869 | 195.35 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |