BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0607200 Os01g0607200|AK071623
(532 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01170.1 | chr2:102364-104462 REVERSE LENGTH=517 600 e-172
>AT2G01170.1 | chr2:102364-104462 REVERSE LENGTH=517
Length = 516
Score = 600 bits (1546), Expect = e-172, Method: Compositional matrix adjust.
Identities = 313/502 (62%), Positives = 367/502 (73%), Gaps = 1/502 (0%)
Query: 29 DYDERKLRLLGYEPQLKRNLSLLSNFAVSFSIVSVXXXXXXXXXXXXXXXXPATMVYGWP 88
D + +L+ LGY+ +LKR+LS+ SNFA+SFSI+SV T+VYGW
Sbjct: 14 DSGQVRLKELGYKQELKRDLSVFSNFAISFSIISVLTGITTTYNTGLRFGGTVTLVYGWF 73
Query: 89 IAGAMTLVVGLAMAEICSAYPTSGGLYFWSARLCSHRRWGPFASWLTGWFNIVGQWAVTT 148
+AG+ T+ VGL+MAEICS+YPTSGGLY+WSA L + RW P ASW+TGWFNIVGQWAVT
Sbjct: 74 LAGSFTMCVGLSMAEICSSYPTSGGLYYWSAML-AGPRWAPLASWMTGWFNIVGQWAVTA 132
Query: 149 SVDFSLAQLIQVIILLSTGGNNGGGYMASKYVVIAFHAAILLSHAAINSLPITWLSFFGQ 208
SVDFSLAQLIQVI+LLSTGG NGGGY S +VVI H IL HA +NSLPI+ LSF GQ
Sbjct: 133 SVDFSLAQLIQVIVLLSTGGRNGGGYKGSDFVVIGIHGGILFIHALLNSLPISVLSFIGQ 192
Query: 209 FAAAWNMLGVFVLMIAVPTVATERASAKFVFTHFNTENNAGIHSNFYIFVLGLLMSQYTL 268
AA WN+LGV VLMI +P V+TERA+ KFVFT+FNT+N GI S YIFVLGLLMSQYT+
Sbjct: 193 LAALWNLLGVLVLMILIPLVSTERATTKFVFTNFNTDNGLGITSYAYIFVLGLLMSQYTI 252
Query: 269 TGYDASAHMTEETKNADRNXXXXXXXXXXXXXXXXXXYILGITFAVKDIPYLLNPENDAG 328
TGYDASAHMTEET +AD+N YILGI++AV DIP LL+ N++G
Sbjct: 253 TGYDASAHMTEETVDADKNGPRGIISAIGISILFGWGYILGISYAVTDIPSLLSETNNSG 312
Query: 329 GYAIAEVFYLAFKSRYXXXXXXXXXXXXXXXXXYFCGMSSVTSNSRMAYAFSRDGAMPLS 388
GYAIAE+FYLAFK+R+ +FCGMSSVTSNSRMAYAFSRDGAMP+S
Sbjct: 313 GYAIAEIFYLAFKNRFGSGTGGIVCLGVVAVAVFFCGMSSVTSNSRMAYAFSRDGAMPMS 372
Query: 389 SVWHKVNKHEVPINAVWLSALISLCMALPSLGSLVAFQAMVSIATIGLYVAYALPILFRV 448
+WHKVN EVPINAVWLSALIS CMAL SLGS+VAFQAMVSIATIGLY+AYA+PI+ RV
Sbjct: 373 PLWHKVNSREVPINAVWLSALISFCMALTSLGSIVAFQAMVSIATIGLYIAYAIPIILRV 432
Query: 449 TLARKHFVPGPFNLGRCXXXXXXXXXXXXXTITVLFSLPVSYPVTKDTLNYTPVAVGGXX 508
TLAR FVPGPF+LG+ TI+VLFSLPV+YP+T +TLNYTPVAV G
Sbjct: 433 TLARNTFVPGPFSLGKYGMVVGWVAVLWVVTISVLFSLPVAYPITAETLNYTPVAVAGLV 492
Query: 509 XXXXXXXXXXARHWFKGPITNL 530
ARHWF GPI+N+
Sbjct: 493 AITLSYWLFSARHWFTGPISNI 514
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,649,275
Number of extensions: 343830
Number of successful extensions: 1085
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1079
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 429
Effective length of database: 8,282,721
Effective search space: 3553287309
Effective search space used: 3553287309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 114 (48.5 bits)