BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0931200 Os01g0931200|AK063586
(317 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0931200 Armadillo-like helical domain containing protein 470 e-133
Os02g0305700 Armadillo-like helical domain containing protein 169 3e-42
Os08g0534900 Armadillo-like helical domain containing protein 166 2e-41
Os08g0534200 Armadillo-like helical domain containing protein 116 3e-26
>Os01g0931200 Armadillo-like helical domain containing protein
Length = 317
Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/317 (77%), Positives = 245/317 (77%)
Query: 1 MALRALDNTLPMASAERXXXXXXXXXXXXXXXXXXXXEGKRKKNDENSAPKATTEQAVEY 60
MALRALDNTLPMASAER EGKRKKNDENSAPKATTEQAVEY
Sbjct: 1 MALRALDNTLPMASAERPKKLPKLSAAAAAVVPAASPEGKRKKNDENSAPKATTEQAVEY 60
Query: 61 VRSEDLQPVPHPKAKAAGLVAELDSKDWIRACDALNDARRLAIHHPSLLNPILGKVMLAI 120
VRSEDLQPVPHPKAKAAGLVAELDSKDWIRACDALNDARRLAIHHPSLLNPILGKVMLAI
Sbjct: 61 VRSEDLQPVPHPKAKAAGLVAELDSKDWIRACDALNDARRLAIHHPSLLNPILGKVMLAI 120
Query: 121 VKTMKSPRSAVCKTSIMACTDVFDSFGNLLSSASDDAFDKXXXXXXXKASQDKRFVXXXX 180
VKTMKSPRSAVCKTSIMACTDVFDSFGNLLSSASDDAFDK KASQDKRFV
Sbjct: 121 VKTMKSPRSAVCKTSIMACTDVFDSFGNLLSSASDDAFDKLLLQLLLKASQDKRFVAEEA 180
Query: 181 XXXXXXXXXXXPPLPLLRKLKAYVHHANLRVRAKAAVAMSQCASRMDVATMKEFGMSAML 240
PPLPLLRKLKAYVHHANLRVRAKAAVAMSQCASRMDVATMKEFGMSAML
Sbjct: 181 EKAMRAMAASMPPLPLLRKLKAYVHHANLRVRAKAAVAMSQCASRMDVATMKEFGMSAML 240
Query: 241 QVAAELLSDRLPEAREAARGMVNSMHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLP 300
QVAAELLSDRLPEAREAARGMVNSMH LSLP
Sbjct: 241 QVAAELLSDRLPEAREAARGMVNSMHAAFSKEAAAAREEEEGAAAAAAASWESLCALSLP 300
Query: 301 PISAQSVAKIVSQSQSQ 317
PISAQSVAKIVSQSQSQ
Sbjct: 301 PISAQSVAKIVSQSQSQ 317
>Os02g0305700 Armadillo-like helical domain containing protein
Length = 346
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 135/233 (57%), Gaps = 14/233 (6%)
Query: 39 GKRKKNDENSAP----KATTEQA------VEYVRSEDLQPVPHPKAKAAGLVAELDSKDW 88
G + N E +AP A T VEY+ SE L + A + LVA LDSKDW
Sbjct: 36 GNKCNNTEENAPPVLPDAVTNGCEAGNADVEYIDSESLTDLEDAGATLSTLVARLDSKDW 95
Query: 89 IRACDALNDARRLAIHHPSLLNPILGKVMLAIVKTMKSPRSAVCKTSIMACTDVFDSFGN 148
+ C+ALN+ R+LAI H L +L ++ IVK++K+PRSAVCKT++M C D+F ++G+
Sbjct: 96 VMTCEALNNVRQLAIFHKDRLQELLEPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGD 155
Query: 149 LLSSASDDAFDKXXXXXXXKASQDKRFVXXXXXXXXXXXXXXXPPLPLLRKLKAYVHHAN 208
L+ D+ D K+SQDKRFV P LL K++ Y+ + N
Sbjct: 156 LMV----DSIDPLLVQLFLKSSQDKRFVCEAAEAALISMTSWIAPSALLPKMQPYLKNRN 211
Query: 209 LRVRAKAAVAMSQCASRMDVATMKEFGMSAMLQVAAELLSDRLPEAREAARGM 261
R+RAKA++ S+ R+ V +KE+GM ++Q+AA LSD+LPE+REAAR +
Sbjct: 212 PRIRAKASMCFSKSVPRLGVEGIKEYGMDKLVQIAATQLSDQLPESREAARKL 264
>Os08g0534900 Armadillo-like helical domain containing protein
Length = 346
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 134/233 (57%), Gaps = 14/233 (6%)
Query: 39 GKRKKNDENSAP----KATTEQA------VEYVRSEDLQPVPHPKAKAAGLVAELDSKDW 88
G + N E +AP A T VEY+ SE L + A + LVA LDSKDW
Sbjct: 36 GNKCNNTEENAPPVLPDAVTNGCEAGNADVEYIDSESLTDLEDAGATLSTLVARLDSKDW 95
Query: 89 IRACDALNDARRLAIHHPSLLNPILGKVMLAIVKTMKSPRSAVCKTSIMACTDVFDSFGN 148
+ C+ALN+ R+LAI H L +L ++ IVK++K+PRSAVCKT++M C D+F ++G+
Sbjct: 96 VMTCEALNNVRQLAIFHKDRLQELLEPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGD 155
Query: 149 LLSSASDDAFDKXXXXXXXKASQDKRFVXXXXXXXXXXXXXXXPPLPLLRKLKAYVHHAN 208
L+ D+ D K+SQDKRFV P LL K++ Y+ + N
Sbjct: 156 LMV----DSIDPLLVQLFLKSSQDKRFVCEAAEAALISMTSWIAPSALLPKMQPYLKNRN 211
Query: 209 LRVRAKAAVAMSQCASRMDVATMKEFGMSAMLQVAAELLSDRLPEAREAARGM 261
R+RAKA++ S+ + V +KE+GM ++Q+AA LSD+LPE+REAAR +
Sbjct: 212 PRIRAKASMCFSKSVPSLGVEGIKEYGMDKLVQIAATQLSDQLPESREAARKL 264
>Os08g0534200 Armadillo-like helical domain containing protein
Length = 233
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 88/142 (61%), Gaps = 4/142 (2%)
Query: 120 IVKTMKSPRSAVCKTSIMACTDVFDSFGNLLSSASDDAFDKXXXXXXXKASQDKRFVXXX 179
IVK++K+PRSAVCKT++M C D+F ++G+L+ D+ D K+SQDKRFV
Sbjct: 14 IVKSVKNPRSAVCKTALMTCADIFKAYGDLMV----DSIDPLLVQLFLKSSQDKRFVCEA 69
Query: 180 XXXXXXXXXXXXPPLPLLRKLKAYVHHANLRVRAKAAVAMSQCASRMDVATMKEFGMSAM 239
P LL K++ Y+ + N R+RAKA++ S+ + V +KE+GM +
Sbjct: 70 AEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVPSLGVEGIKEYGMDKL 129
Query: 240 LQVAAELLSDRLPEAREAARGM 261
+Q+AA LSD+LPE+REAAR +
Sbjct: 130 VQIAATQLSDQLPESREAARKL 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.126 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,984,299
Number of extensions: 210083
Number of successful extensions: 602
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 4
Length of query: 317
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 216
Effective length of database: 11,762,187
Effective search space: 2540632392
Effective search space used: 2540632392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)