BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0928100 Os01g0928100|AK120714
         (570 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0928100  Conserved hypothetical protein                      833   0.0  
Os11g0520500  Conserved hypothetical protein                      357   1e-98
Os05g0148500  Electron transport accessory protein domain co...   163   4e-40

>Os01g0928100 Conserved hypothetical protein
          Length = 570

 Score =  833 bits (2152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/455 (92%), Positives = 419/455 (92%)

Query: 116 HGSNGVSLLGRTARSPSPALGRNIVEPPPTVRSTSAGRPAVASRPTTTVVPPIKTSTTLR 175
           HGSNGVSLLGRTARSPSPALGRNIVEPPPTVRSTSAGRPAVASRPTTTVVPPIKTSTTLR
Sbjct: 116 HGSNGVSLLGRTARSPSPALGRNIVEPPPTVRSTSAGRPAVASRPTTTVVPPIKTSTTLR 175

Query: 176 TXXXXXXXXXXXXXDRSRQKRFDTGHLNSRESTPKREASALQDELDILQEENESVXXXXX 235
           T             DRSRQKRFDTGHLNSRESTPKREASALQDELDILQEENESV     
Sbjct: 176 TPSPIPPVAVEPPVDRSRQKRFDTGHLNSRESTPKREASALQDELDILQEENESVLEKLR 235

Query: 236 XXXXXXXXXXXXXXXXXXQVAALGEGVSLEARLLSRKEAALKQREAALKAARESKDGKDG 295
                             QVAALGEGVSLEARLLSRKEAALKQREAALKAARESKDGKDG
Sbjct: 236 LAEERCEEAEARAKELEKQVAALGEGVSLEARLLSRKEAALKQREAALKAARESKDGKDG 295

Query: 296 EVTTLKHELDCAKEEVVTAMEQLKEAETETKALRSMTQRMILTQEEMEEVVLKRCWLSRY 355
           EVTTLKHELDCAKEEVVTAMEQLKEAETETKALRSMTQRMILTQEEMEEVVLKRCWLSRY
Sbjct: 296 EVTTLKHELDCAKEEVVTAMEQLKEAETETKALRSMTQRMILTQEEMEEVVLKRCWLSRY 355

Query: 356 WGLAVQYGVYPEIAVSKHEHWSSLAPLPLEVVLSAGQKAKEEPLKQGEDDAQRRNKLVRD 415
           WGLAVQYGVYPEIAVSKHEHWSSLAPLPLEVVLSAGQKAKEEPLKQGEDDAQRRNKLVRD
Sbjct: 356 WGLAVQYGVYPEIAVSKHEHWSSLAPLPLEVVLSAGQKAKEEPLKQGEDDAQRRNKLVRD 415

Query: 416 MSDVMGEGNIESMLSVEMGLRELSSLKVEDAVVVALGQHRRPSIVRQFTSDFKSPGEPKF 475
           MSDVMGEGNIESMLSVEMGLRELSSLKVEDAVVVALGQHRRPSIVRQFTSDFKSPGEPKF
Sbjct: 416 MSDVMGEGNIESMLSVEMGLRELSSLKVEDAVVVALGQHRRPSIVRQFTSDFKSPGEPKF 475

Query: 476 LEAFDLSHEEAEDVSFKQAWLIYFWRRAKTHGIEEDIAEERLQFWIGRNAVAPTSHDAID 535
           LEAFDLSHEEAEDVSFKQAWLIYFWRRAKTHGIEEDIAEERLQFWIGRNAVAPTSHDAID
Sbjct: 476 LEAFDLSHEEAEDVSFKQAWLIYFWRRAKTHGIEEDIAEERLQFWIGRNAVAPTSHDAID 535

Query: 536 VERGLTELRKLGIEQQLWEGSRADIDEDSSAIENH 570
           VERGLTELRKLGIEQQLWEGSRADIDEDSSAIENH
Sbjct: 536 VERGLTELRKLGIEQQLWEGSRADIDEDSSAIENH 570



>Os11g0520500 Conserved hypothetical protein
          Length = 831

 Score =  357 bits (916), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 200/433 (46%), Positives = 267/433 (61%), Gaps = 57/433 (13%)

Query: 134 ALGRNIVE------PPPTVRSTSAGRPAVASRPTTTVVPPIKTSTTLRTXXXXXXXXXXX 187
           A+GRN V+      PP T RST A    V  RP   V  P  T                 
Sbjct: 405 AIGRNGVDTGAANRPPSTGRSTFAPPVGVNIRPLQAVEMPNGTP---------------- 448

Query: 188 XXDRSRQKRF-DTGHLNSRESTPKREASALQDELDILQEENESVXXXXXXXXXXXXXXXX 246
              R R+  + D     S  S    ++S + +EL++L++EN                   
Sbjct: 449 ---RERRAIYPDPTFAQSTRSRDSHDSSTITEELEMLKDEN------------------- 486

Query: 247 XXXXXXXQVAALGEGVSLEARLLSRKEAALKQ--REAALKAARESKDGKDGEVTTLKHEL 304
                      L E + L      + EA  ++  ++  ++ A  SK+ K  E+ TL+ +L
Sbjct: 487 ---------VNLLEKLGLAEERFRQSEARTRELEKQQEIRKALISKNDKSEEIATLQKQL 537

Query: 305 DCAKEEVVTAMEQLKEAETETKALRSMTQRMILTQEEMEEVVLKRCWLSRYWGLAVQYGV 364
             A+E+   A+++L+EAE+ETK LR+MT RMIL++EEMEEVV+KRCWL+RYWGLAVQYG+
Sbjct: 538 QSAREKEAAAVQKLQEAESETKYLRTMTHRMILSKEEMEEVVMKRCWLARYWGLAVQYGI 597

Query: 365 YPEIAVSKHEHWSSLAPLPLEVVLSAGQKAKEEPLKQGEDDAQRRNKLVRDMSDVMGEGN 424
           YP+I++SKHE+WSS APLP E V +AGQ+AK+  L+ G DD +   + V +++   GEGN
Sbjct: 598 YPDISMSKHEYWSSFAPLPFEYVTAAGQRAKDGSLRSG-DDLEDTERFVHELTVTAGEGN 656

Query: 425 IESMLSVEMGLRELSSLKVEDAVVVALGQHRRPSIVRQFTSDFKSPGEPKFLEAFDLSHE 484
           IE+MLSV+ GL+EL+ LKVEDAV++AL  H RP++      D KS G+ KF EAFDLS E
Sbjct: 657 IETMLSVDKGLQELAFLKVEDAVLIALAHHHRPNVAELVDPDIKSSGDEKFTEAFDLSKE 716

Query: 485 EAEDVSFKQAWLIYFWRRAKTHGIEEDIAEERLQFWIGRNAVAPTSHDAIDVERGLTELR 544
           E EDV FKQAWL+YFWRRAKTH +E+DIAEERLQ WI R+   PTSHDA+DV+ G+ ELR
Sbjct: 717 EEEDVLFKQAWLVYFWRRAKTHNVEDDIAEERLQMWIDRHGQQPTSHDAVDVDMGIRELR 776

Query: 545 KLGIEQQLWEGSR 557
           +LGIEQ LWE SR
Sbjct: 777 RLGIEQLLWELSR 789



>Os05g0148500 Electron transport accessory protein domain containing protein
          Length = 755

 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 126/322 (39%), Positives = 180/322 (55%), Gaps = 29/322 (9%)

Query: 210 KREASALQDELDILQEENESVXXXXXXXXXXXXXXXXXXXXXXXQVAALGEGVSLEARLL 269
           +R +S+L DE++ LQ E E +                         A + + +  EA L+
Sbjct: 205 RRTSSSLHDEINSLQVETEGMYEKFNLAEERSEEGDAKSMH---MAAVIADAIEPEANLI 261

Query: 270 SRKEAALKQREAALKAARESKDGKDG-EVTTLKHELDCAKEEVVTAMEQLKEAETETKAL 328
           SRK+AAL+QR+A+L++A    +     E+  L+ E   A   V +  ++LK   +  ++L
Sbjct: 262 SRKDAALQQRKASLRSASRRSNSASCDEIAALRSEAKVANS-VSSVSQRLKSTGSIVRSL 320

Query: 329 RSMTQRMILTQEEMEEVVLKRCWLSRYWGL--AVQYG---VYPEIAVSKHEHWSSLAPLP 383
              T RM+L+QEEM           R++     V+ G   ++ +IA  K E+WSS APL 
Sbjct: 321 HGATNRMVLSQEEM-----------RFYKYDAKVKKGSKSIHCDIAEEKQEYWSSFAPLS 369

Query: 384 LEVVLSAGQKAKEEPLKQGEDDAQRRNKL--VRDMSDVMGEGNIESMLSVEMGLRELSSL 441
           LEVVLS GQKA++  L     D + ++K+     ++D+ G+GNIESML VE GLRELSSL
Sbjct: 370 LEVVLSIGQKARDGALSD-HADMETKSKMSDASHVNDMSGDGNIESMLLVERGLRELSSL 428

Query: 442 KVEDAVVVALGQHRRPSIVRQFTSDFKSPGE--PKFLEAFDLSHEEAEDVSFKQAWLIYF 499
           K   + +  L Q+   S + Q  S  K P        E+ +LS EE +DV FKQ+WL YF
Sbjct: 429 KRTQSCL--LYQNIDASDLSQVASP-KCPSSEGQNPPESLELSEEEQDDVRFKQSWLTYF 485

Query: 500 WRRAKTHGIEEDIAEERLQFWI 521
           WRRAK+H IEEDIA+ERLQFWI
Sbjct: 486 WRRAKSHDIEEDIADERLQFWI 507



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.128    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,533,028
Number of extensions: 565924
Number of successful extensions: 2467
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2454
Number of HSP's successfully gapped: 3
Length of query: 570
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 464
Effective length of database: 11,501,117
Effective search space: 5336518288
Effective search space used: 5336518288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)