BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0921800 Os01g0921800|Os01g0921800
(369 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0921800 Cyclin-like F-box domain containing protein 438 e-123
Os04g0385600 Zinc finger, MYND-type domain containing protein 222 4e-58
Os11g0488900 Zinc finger, MYND-type domain containing protein 169 4e-42
Os02g0506400 Similar to Ubiquitin-specific protease 15 163 2e-40
Os01g0301800 88 1e-17
>Os01g0921800 Cyclin-like F-box domain containing protein
Length = 369
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 242/369 (65%), Positives = 242/369 (65%)
Query: 1 MVGQKRKRSSLPPQYATAGDCCXXXXXXXXXXXXXPDYLDELPXXXXXXXXXXXXXXXXX 60
MVGQKRKRSSLPPQYATAGDCC PDYLDELP
Sbjct: 1 MVGQKRKRSSLPPQYATAGDCCGGGGRRKRLAGGGPDYLDELPDDLVLAVLSKLAASASS 60
Query: 61 XXXXXXXHLTCKRLNGLGRHDMVFAKASPASLAVKAASWSEPVQRFLKLCADAGNLEACY 120
HLTCKRLNGLGRHDMVFAKASPASLAVKAASWSEPVQRFLKLCADAGNLEACY
Sbjct: 61 PSDLLSVHLTCKRLNGLGRHDMVFAKASPASLAVKAASWSEPVQRFLKLCADAGNLEACY 120
Query: 121 ILGMIRFYCLGNRSXXXXXXXXXXXXXXXXXXYSLAVIQFNGSGGAKSXXXXXXXXXXXX 180
ILGMIRFYCLGNRS YSLAVIQFNGSGGAKS
Sbjct: 121 ILGMIRFYCLGNRSGGAALLARAAVGGHAAALYSLAVIQFNGSGGAKSDRDLRAGAALCA 180
Query: 181 XXXXXXHVDALRELGHCLQDGYGVRRDPAEGRRFLVXXXXXXXXXXXXXXXXXXXXXXXX 240
HVDALRELGHCLQDGYGVRRDPAEGRRFLV
Sbjct: 181 RAAALGHVDALRELGHCLQDGYGVRRDPAEGRRFLVAANARELTLALAAAASHRPFAALP 240
Query: 241 XXXXXXXXXXXXXXXSDFGWSLPEAEPHPANLFMADWWASRGVQATAKKPGLEAPAAATG 300
SDFGWSLPEAEPHPANLFMADWWASRGVQATAKKPGLEAPAAATG
Sbjct: 241 LAGGAAAGAIGCPLLSDFGWSLPEAEPHPANLFMADWWASRGVQATAKKPGLEAPAAATG 300
Query: 301 DSDGGGELRLCSHVXXXXXXXXXXXXXXXSVCGAANYCSRACQALDWKRAHKAQCVPMDR 360
DSDGGGELRLCSHV SVCGAANYCSRACQALDWKRAHKAQCVPMDR
Sbjct: 301 DSDGGGELRLCSHVRCGRRETRRHEFRRCSVCGAANYCSRACQALDWKRAHKAQCVPMDR 360
Query: 361 WLLAAGEAQ 369
WLLAAGEAQ
Sbjct: 361 WLLAAGEAQ 369
>Os04g0385600 Zinc finger, MYND-type domain containing protein
Length = 395
Score = 222 bits (565), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 158/330 (47%), Gaps = 7/330 (2%)
Query: 37 DYLDELPXXXXXXXXXXXXXXXXXXXXXXXXHLTCKRLNGLGRHDMVFAKASPASLAVKA 96
D +ELP LTCKR LG+ +V A+ASP LAV+A
Sbjct: 49 DMFEELPDDLVVSILADVAASARSPGDLAGAMLTCKRFRELGQSKVVLARASPRCLAVRA 108
Query: 97 ASWSEPVQRFLKLCADAGNLEACYILGMIRFYCLGNRSXXXXXXXXXXXXXXXXXXYSLA 156
+WS+ RFL+ CADAGNL+ACY+LGMIRFYCLG+R YSLA
Sbjct: 109 KAWSDAAHRFLQRCADAGNLDACYLLGMIRFYCLGSRGSGAALMAAAAVGGHREALYSLA 168
Query: 157 VIQFNGSGGAKSXXXXXXXXXXXXXXXXXXHVDALRELGHCLQDGYGVRRDPAEGRRFLV 216
VIQFNGSGG+K HVDALRELGHCLQDGYGVRR +GRR L+
Sbjct: 169 VIQFNGSGGSKDDRDLRAGAALCARAASLGHVDALRELGHCLQDGYGVRRSVLDGRRLLI 228
Query: 217 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDFGW--SLPEA--EPHPANL 272
SDFG + P+A E H AN
Sbjct: 229 --QANARELAAAVAASASLLRAATGKPAAAASRRHSCLLSDFGCHAAAPKAGGEAHAANR 286
Query: 273 FMADWWASRGVQATAKKPGLEAPAAATGDSDGGGELRLCSHVXXXXXXXXXXXXXXXSVC 332
F+ DW+ASR + + + + + G LRLCSH SVC
Sbjct: 287 FLVDWFASRPLAGSTAAAAAAPTPGSAAEDEAAG-LRLCSHALCGRPETRRHEFRRCSVC 345
Query: 333 GAANYCSRACQALDWKRAHKAQCVPMDRWL 362
G NYCSRACQAL WK AHKA+C PMDRWL
Sbjct: 346 GVVNYCSRACQALHWKTAHKAECTPMDRWL 375
>Os11g0488900 Zinc finger, MYND-type domain containing protein
Length = 372
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 134/281 (47%), Gaps = 33/281 (11%)
Query: 77 LGRHDMVFAKASPASLAVKAASWSEPVQRFLKLCADAGNLEACYILGMIRFYCLGNRSXX 136
L H V ++AS A++AV+ +WSE RFL+ CA AG+L ACY LGM+RFYCLG+R+
Sbjct: 105 LATHPAVLSRASAAAVAVRWGAWSEAAHRFLRRCAAAGSLHACYFLGMVRFYCLGSRATG 164
Query: 137 XXXXXXXXXXXXXXXXYSLAVIQFNGSGGAKSXXXXXXXXXXXXXXXXXXHVDALRELGH 196
Y+LAV+QFNGSGG K+ H ALRELGH
Sbjct: 165 AALLGRAAGGGHAPALYALAVVQFNGSGGGKADKDARAGVALCARAAWLGHTPALRELGH 224
Query: 197 CLQDGYGVRRDPAEGRRFLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 256
CLQDGYG RRD GRR L+
Sbjct: 225 CLQDGYGARRDAPAGRRLLL---------------------------HAAAREHLSWKKH 257
Query: 257 DFGWSLPEAEPHPANLFMADWWASRGVQATAKK--PGLEAPAAATGDSDGGGELRLCSHV 314
+ G A + FM WW S +A A+ PG G+ DGG +LRLCSH
Sbjct: 258 NHGHHDGSAAEDAVSRFMVAWWDSHRAKAAARGCLPGEH----GDGEHDGGEDLRLCSHA 313
Query: 315 XXXXXXXXXXXXXXXSVCGAANYCSRACQALDWKRAHKAQC 355
SVCGAA+YCSRACQALDWKRAH+AQC
Sbjct: 314 RCGRRETRRHEFRRCSVCGAASYCSRACQALDWKRAHRAQC 354
>Os02g0506400 Similar to Ubiquitin-specific protease 15
Length = 379
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 135/297 (45%), Gaps = 20/297 (6%)
Query: 69 LTCKRLNGLGRHDMVFAKASPASLAVKAASWSEPVQRFLKLCADAGNLEACYILGMIRFY 128
LTC+R LG+H +V A+ASP+++AV+AA+W + RFL CA+AGN+EA Y+LGMI FY
Sbjct: 76 LTCRRFRELGKHGLVLARASPSAVAVRAAAWCDDAHRFLVRCAEAGNVEASYLLGMIMFY 135
Query: 129 CLGNRSXXXXXXXXXXXXXXXXXXYSLAVIQFNGSGGAKSXXXXXXXXXXXXXXXXXXHV 188
C NR YS+A+IQFNGSG K H
Sbjct: 136 CFENRKLGAELLGAAARRGHGEALYSMAIIQFNGSGLPKDGRNLQAGAQLCARAASRGHT 195
Query: 189 DALRELGHCLQDGYGVRRDPAEGRRFLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 248
DALRELGHC+ DGYGVRR + GRR L+
Sbjct: 196 DALRELGHCVSDGYGVRRSLSGGRRLLI-QANFRELCAAVANGGARFAAALGRSGECKPP 254
Query: 249 XXXXXXXSDFGWSL---PEAEPHPANLFMADWWASRGVQATAKKPGLEAPAAATGDSDGG 305
SD+G + H AN F+A W+ASR + + A
Sbjct: 255 GPHMCLLSDYGCHVAGAAGRRAHAANAFLAGWYASRPLASGAGAA--------------- 299
Query: 306 GELRLCSHVXXXXXXXXXXXXXXXSVCGAANYCSRACQALDWKRAHKAQCVPMDRWL 362
LR+CS SVC YCSRACQA+ WK AHK+ CVPM WL
Sbjct: 300 -ALRMCSQPTCGRPETRKHEFRRCSVCSGVIYCSRACQAMHWKVAHKSACVPMAHWL 355
>Os01g0301800
Length = 481
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 256 SDFGWSLPEAEPHPANLFMADWWASRGVQATAKKPGLEAP---AAATGDSDGGGELRLCS 312
SDF WSLPE EP+PANLFMAD S GVQATAKK LEAP AT D++G EL+LCS
Sbjct: 117 SDFRWSLPEVEPYPANLFMADSSMSCGVQATAKKLDLEAPVVATTATSDNNGHSELQLCS 176
Query: 313 HVXXXXXXXXXXXXXXXSVCGAANYCSRACQALDWKRAHKAQCVPMDRWLLAAGEAQ 369
+ SVCGAANY SR K H A + + GE Q
Sbjct: 177 QMWCGRRETRRHEFRRCSVCGAANYSSRGTGEASPKSGHLAAVLSKNDNRWRGGEIQ 233
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,884,095
Number of extensions: 303877
Number of successful extensions: 846
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 833
Number of HSP's successfully gapped: 9
Length of query: 369
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 267
Effective length of database: 11,709,973
Effective search space: 3126562791
Effective search space used: 3126562791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)