Os01g0921800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os01g0921800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.84 | 0.508 | 9.46 | 0.993 | 0.759 | -1.79 | 0.8 | 3.47 | -0.202 | 7.04 | 15.4 | 288 | -- | -- |
| 124.81 | 0.52 | 9.53 | 0.464 | 0.739 | -1.79 | 0.191 | -- | -0.36 | 7.02 | 5.303 | 309 | -- | -- |
| 118.34 | 0.507 | 9.47 | 0.953 | 0.751 | -1.81 | -- | 3.08 | -0.215 | 7.01 | 15.4 | 285 | -- | -- |
| 124.88 | 0.52 | 9.53 | 0.458 | 0.739 | -1.8 | -- | -- | -0.353 | 6.94 | 6.113 | 306 | -- | -- |
| 139.92 | 0.551 | 9.46 | 1.21 | -- | -2.25 | -- | 3.14 | -0.0784 | -- | 16.88 | 362 | -- | -- |
| 159.18 | 0.591 | 9.58 | 0.0667 | 1.21 | -- | 0.373 | -- | -0.608 | 6.18 | -- | -- | -- | -- |
| 159.52 | 0.591 | 9.58 | 0.0703 | 1.22 | -- | -- | -- | -0.61 | 6.15 | -- | -- | -- | -- |
| 145.71 | 0.562 | 9.53 | 0.621 | -- | -2.41 | -- | -- | -0.249 | -- | 14.9 | 368 | -- | -- |
| 129.86 | 0.531 | 9.55 | -- | 0.8 | -1.59 | -- | -- | -0.428 | 6.78 | 5.534 | 301 | -- | -- |
| 236.19 | 0.718 | 9.6 | 0.104 | -- | -- | -- | -- | -0.583 | -- | -- | -- | -- | -- |
| 159.65 | 0.591 | 9.58 | -- | 1.22 | -- | -- | -- | -0.617 | 6.14 | -- | -- | -- | -- |
| 154.92 | 0.58 | 9.55 | -- | -- | -2.16 | -- | -- | -0.335 | -- | 15.3 | 366 | -- | -- |
| 236.47 | 0.718 | 9.6 | -- | -- | -- | -- | -- | -0.594 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 2 | 116.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 3 | 116.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 4 | 116.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 6 | 116.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 7 | 116.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 8 | 116.99 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 9 | 117.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 16 | 117.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 19 | 117.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 22 | 117.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 13 |
| 23 | 117.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 51 | 118.26 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 52 | 118.26 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 62 | 118.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 90 | 118.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 102 | 118.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 170 | 119.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 174 | 119.17 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 213 | 119.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 219 | 119.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 227 | 119.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 10 |
| 265 | 119.72 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 270 | 119.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 295 | 119.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 318 | 120.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 335 | 120.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 337 | 120.10 | radiation | 30 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 341 | 120.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 347 | 120.14 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 357 | 120.18 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 375 | 120.25 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 394 | 120.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 409 | 120.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 419 | 120.41 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 437 | 120.45 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 443 | 120.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 533 | 120.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 618 | 120.93 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 741 | 121.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 796 | 121.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 834 | 121.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 993 | 121.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |