BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0916200 Os01g0916200|AK073832
(950 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0916200 Armadillo-like helical domain containing protein 1872 0.0
Os06g0167100 Armadillo-like helical domain containing protein 217 4e-56
AK110215 216 7e-56
Os02g0805000 Adaptin, N-terminal domain containing protein 198 2e-50
>Os01g0916200 Armadillo-like helical domain containing protein
Length = 950
Score = 1872 bits (4848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 913/950 (96%), Positives = 913/950 (96%)
Query: 1 MEQLRTIGRELAMGSQGGWGQSKEFLDLVKSIGEARSKAEEDRIISRELDHLKRRLADPD 60
MEQLRTIGRELAMGSQGGWGQSKEFLDLVKSIGEARSKAEEDRIISRELDHLKRRLADPD
Sbjct: 1 MEQLRTIGRELAMGSQGGWGQSKEFLDLVKSIGEARSKAEEDRIISRELDHLKRRLADPD 60
Query: 61 VPRRKMKELLLRLVYAEMLGHDASFGHIHAVKMTHDESLPLKRTGYLAVSLFLDERHDLV 120
VPRRKMKELLLRLVYAEMLGHDASFGHIHAVKMTHDESLPLKRTGYLAVSLFLDERHDLV
Sbjct: 61 VPRRKMKELLLRLVYAEMLGHDASFGHIHAVKMTHDESLPLKRTGYLAVSLFLDERHDLV 120
Query: 121 ILVVNTIQKDLRSDNYLVVCAALTAACRLIGEEAIPAVLPQVVELLAHPKEAVRKKAVMA 180
ILVVNTIQKDLRSDNYLVVCAALTAACRLIGEEAIPAVLPQVVELLAHPKEAVRKKAVMA
Sbjct: 121 ILVVNTIQKDLRSDNYLVVCAALTAACRLIGEEAIPAVLPQVVELLAHPKEAVRKKAVMA 180
Query: 181 LHRFYQRSPSSVSHLVSNFRKRLCDNDPGVMGATLCPLYDLILEDPNSYKDLVVSFVNIL 240
LHRFYQRSPSSVSHLVSNFRKRLCDNDPGVMGATLCPLYDLILEDPNSYKDLVVSFVNIL
Sbjct: 181 LHRFYQRSPSSVSHLVSNFRKRLCDNDPGVMGATLCPLYDLILEDPNSYKDLVVSFVNIL 240
Query: 241 KQVAERRLPTSYDYHQMPAPFIQIKLLKILAVLGSGDKQASGNMYMVLGDIFRKGDTASN 300
KQVAERRLPTSYDYHQMPAPFIQIKLLKILAVLGSGDKQASGNMYMVLGDIFRKGDTASN
Sbjct: 241 KQVAERRLPTSYDYHQMPAPFIQIKLLKILAVLGSGDKQASGNMYMVLGDIFRKGDTASN 300
Query: 301 IGNAILYECICCISSIFPNAKMLDAAAETTSKFLKSDSHNLKYMGIDALGRLIKINPDIA 360
IGNAILYECICCISSIFPNAKMLDAAAETTSKFLKSDSHNLKYMGIDALGRLIKINPDIA
Sbjct: 301 IGNAILYECICCISSIFPNAKMLDAAAETTSKFLKSDSHNLKYMGIDALGRLIKINPDIA 360
Query: 361 EEHQLAVIDCLEDPDDTLKRKTFELLYKMTKSTNVEVIVDRMIEYMINITDHHYKTEIAS 420
EEHQLAVIDCLEDPDDTLKRKTFELLYKMTKSTNVEVIVDRMIEYMINITDHHYKTEIAS
Sbjct: 361 EEHQLAVIDCLEDPDDTLKRKTFELLYKMTKSTNVEVIVDRMIEYMINITDHHYKTEIAS 420
Query: 421 RCVELAEQFAPSNQWFIQTMNKVFEHAGDLVNIRVAHNLMRLIXXXXXXXXXXXXSQLRS 480
RCVELAEQFAPSNQWFIQTMNKVFEHAGDLVNIRVAHNLMRLI SQLRS
Sbjct: 421 RCVELAEQFAPSNQWFIQTMNKVFEHAGDLVNIRVAHNLMRLIAEGFGEEDEGADSQLRS 480
Query: 481 SAVDSYLRIVGEPKLPSSFLQIICWVLGEYGTADGKYSASYIIGKLYDVAEAHPTDDTVR 540
SAVDSYLRIVGEPKLPSSFLQIICWVLGEYGTADGKYSASYIIGKLYDVAEAHPTDDTVR
Sbjct: 481 SAVDSYLRIVGEPKLPSSFLQIICWVLGEYGTADGKYSASYIIGKLYDVAEAHPTDDTVR 540
Query: 541 AYAISAILKIFAFEIALGRKIDMLPECQSLIDELSASHSTDLQQRAYELQALLGLDKQAV 600
AYAISAILKIFAFEIALGRKIDMLPECQSLIDELSASHSTDLQQRAYELQALLGLDKQAV
Sbjct: 541 AYAISAILKIFAFEIALGRKIDMLPECQSLIDELSASHSTDLQQRAYELQALLGLDKQAV 600
Query: 601 ENVMPADASCEDIEIDRNLSFLNGYVQQAIENGAAPYIPESERSGVVSVGNYKAQDQQET 660
ENVMPADASCEDIEIDRNLSFLNGYVQQAIENGAAPYIPESERSGVVSVGNYKAQDQQET
Sbjct: 601 ENVMPADASCEDIEIDRNLSFLNGYVQQAIENGAAPYIPESERSGVVSVGNYKAQDQQET 660
Query: 661 SAHALRFEAYELPPAASQASISPTTDLVPVPEPSYYKEDHQMSRSQPSGDSLSGEFGLKL 720
SAHALRFEAYELPPAASQASISPTTDLVPVPEPSYYKEDHQMSRSQPSGDSLSGEFGLKL
Sbjct: 661 SAHALRFEAYELPPAASQASISPTTDLVPVPEPSYYKEDHQMSRSQPSGDSLSGEFGLKL 720
Query: 721 RLDGVQKKWGRPAYXXXXXXXXXXXXQQATNXXXXXXXXXXXXXQARESTYGSKRQQATE 780
RLDGVQKKWGRPAY QQATN QARESTYGSKRQQATE
Sbjct: 721 RLDGVQKKWGRPAYSSSSTPSSSTSSQQATNGGVSSEVGGSTSSQARESTYGSKRQQATE 780
Query: 781 VSAEKQRLAASLFGKADRKTQAGRKTAKESSSTEKVATANATPQPAKEQVIPSAPPPDLL 840
VSAEKQRLAASLFGKADRKTQAGRKTAKESSSTEKVATANATPQPAKEQVIPSAPPPDLL
Sbjct: 781 VSAEKQRLAASLFGKADRKTQAGRKTAKESSSTEKVATANATPQPAKEQVIPSAPPPDLL 840
Query: 841 DLGEPVSSSPPLADPFTQLEGLLGPASASPVVSETPASSTSKTPDLMSIFSDDVQTGVTS 900
DLGEPVSSSPPLADPFTQLEGLLGPASASPVVSETPASSTSKTPDLMSIFSDDVQTGVTS
Sbjct: 841 DLGEPVSSSPPLADPFTQLEGLLGPASASPVVSETPASSTSKTPDLMSIFSDDVQTGVTS 900
Query: 901 GSTEPSLGVNVVAAKKGPSLQDALQKDAAARQVGVTPTGNNPILFKDLLG 950
GSTEPSLGVNVVAAKKGPSLQDALQKDAAARQVGVTPTGNNPILFKDLLG
Sbjct: 901 GSTEPSLGVNVVAAKKGPSLQDALQKDAAARQVGVTPTGNNPILFKDLLG 950
>Os06g0167100 Armadillo-like helical domain containing protein
Length = 870
Score = 217 bits (552), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 146/591 (24%), Positives = 278/591 (47%), Gaps = 50/591 (8%)
Query: 27 DLVKSIGEARSKAEEDRIISRELDHLKRRLA--DPDVPRRKMKELLLRLVYAEMLGHDAS 84
D++++I ++ AEE ++ RE ++ ++ D D R M +L++ MLG+
Sbjct: 16 DMIRAIRACKTAAEERAVVRRECAAIRAAISEGDQDYRHRNMA----KLMFIHMLGYPTH 71
Query: 85 FGHIHAVKMTHDESLPLKRTGYLAVSLFLDERHDLVILVVNTIQKDLRSDNYLVVCAALT 144
FG + +K+ P KR GYL + L LDER ++++LV N++++DL N +V AL
Sbjct: 72 FGQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQFIVGLALC 131
Query: 145 AACRLIGEEAIPAVLPQVVELLAHPKEAVRKKAVMALHRFYQRSPSSVSHLVSNFRKRLC 204
A + E + P+V LL + +KKA + R ++ P + + + L
Sbjct: 132 ALGNICSAEMARDLSPEVERLLQSREPNTKKKAALCSIRIVRKVPDLAENFMGSAVSLLK 191
Query: 205 DNDPGVM------GATLCPLYDLILEDPNSYKDLVVSFVNILKQVAERRLPTSYDYHQMP 258
+ GV+ A LC LE K+ + V IL+ V+ YD +
Sbjct: 192 EKHHGVLISAVQLCAELCKASKEALE--YLRKNCLDGLVRILRDVSNSSYAPEYDIAGIT 249
Query: 259 APFIQIKLLKILAVLGSGDKQASGNMYMVLGDIFRKGDTASNIGNAILYECICCISSIFP 318
PF+ I++LK++ +LG GD S + +L + K ++ N GNAILYEC+ I I
Sbjct: 250 DPFLHIRVLKLMRILGQGDADCSEFVNDILAQVATKTESNKNAGNAILYECVETIMGIEA 309
Query: 319 NAKMLDAAAETTSKFLKSDSHNLKYMGIDALGRLIKINPDIAEEHQLAVIDCLEDPDDTL 378
+ + A +FL + +N++Y+ ++ L + ++++ + H+ +++C++D D ++
Sbjct: 310 TSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAMEVDTQAVQRHRATILECVKDADVSI 369
Query: 379 KRKTFELLYKMTKSTNVEVIVDRMIEYMINITDHHYKTEIASRCVELAEQFAPSNQWFIQ 438
+++ EL+Y + N + + +++Y+ ++D +K ++ ++ + E+F+ W++
Sbjct: 370 RKRALELVYLLVNDANAKSLTKELVDYL-EVSDQDFKDDLTAKICSIVEKFSQDKLWYLD 428
Query: 439 TMNKVFEHAGDLVNIRVAHNLMRLIXXXXXXXXXXXXSQLRSSAVDSYLRIVGEPKLPSS 498
M KV AG+ V V H L+ LI S+L+ +V S + + S
Sbjct: 429 QMFKVLSLAGNYVKDDVWHALIVLI---------SNASELQGYSVRSLYKALLACGEQES 479
Query: 499 FLQIICWVLGEYGTADGKYSASYIIGKLYDVAEA------------HPTDDTVRAYAISA 546
+++ W +GEYG I + V E+ + D T RA + +
Sbjct: 480 LVRVAVWCIGEYGEMLVNNVGMLDIEEPITVTESDAVDAVEVSLKRYSADVTTRAMCLVS 539
Query: 547 ILKIFAFEIALGRKIDMLPECQSLIDELSASHS----TDLQQRAYELQALL 593
+LK+ + P I E+ A + +LQQR+ E +++
Sbjct: 540 LLKLSS----------RFPPTSERIKEIVAQNKGNTVLELQQRSIEFNSII 580
>AK110215
Length = 884
Score = 216 bits (550), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 143/584 (24%), Positives = 273/584 (46%), Gaps = 37/584 (6%)
Query: 28 LVKSIGEARSKAEEDRIISRELDHLKRRLADPDVPRRKMKELLLRLVYAEMLGHDASFGH 87
L+K+I ++ A+E +I +E ++ D D R + +L+Y MLG+ A FG
Sbjct: 33 LIKAIRSCKTLADERSLIQKESASIRTAFKDEDPFARHNN--IAKLLYIHMLGYPAHFGQ 90
Query: 88 IHAVKMTHDESLPLKRTGYLAVSLFLDERHDLVILVVNTIQKDLRSDNYLVVCAALTAAC 147
I +K+ KR GYL + L LDE +++ LV N ++ D+ N V AL
Sbjct: 91 IECLKLVATPRFTDKRLGYLGIMLLLDENTEVLTLVTNGLKNDMEHSNMYVCGLALCTFA 150
Query: 148 RLIGEEAIPAVLPQVVELLAHPKEAVRKKAVMALHRFYQRSPSSVSHLVSNFRKRLCDND 207
+ EE + ++ +L+ +R+KA + R ++ P + H R+ L D +
Sbjct: 151 NIASEEMSRDLCNEIEKLMGSSNTYIRRKAAICAMRIVRKVPDLIDHFADRTRQLLSDKN 210
Query: 208 PGVMGATLCPLYDLILEDPNSYKDL---VVSFVNILKQVAERRLPTSYDYHQMPAPFIQI 264
GV+ + +++ +D ++ +D V V LK + +D + PF+Q+
Sbjct: 211 HGVLLCAVTLAIEIVRQDADALQDFRRAVPLLVQHLKSLVTTGYSPEHDVSGITDPFLQV 270
Query: 265 KLLKILAVLGSGDKQASGNMYMVLGDIFRKGDTASNIGNAILYECICCISSIFPNAKMLD 324
K+L++L VLG + QAS M +L + + + N+GN+ILYE + I I + +
Sbjct: 271 KILRLLRVLGKENAQASEAMNDILAQVATNTEASKNVGNSILYETVLTILEIDADNGLRV 330
Query: 325 AAAETTSKFLKSDSHNLKYMGIDALGRLIKINPDIAEEHQLAVIDCLEDPDDTLKRKTFE 384
A KFL + +N++Y+ ++ L +++ ++ + + H+ ++DCL D D +++R+ E
Sbjct: 331 MAINILGKFLSNRDNNIRYVALNTLSKVVSMDTNAVQRHRNIILDCLRDGDISIRRRALE 390
Query: 385 LLYKMTKSTNVEVIVDRMIEYMINITDHHYKTEIASRCVELAEQFAPSNQWFIQTMNKVF 444
L Y + +NV V+ ++ ++ + D+ +K + ++ AE+FAP+ +W I T+ +V
Sbjct: 391 LSYALINESNVRVLTRELLSFL-EVADNEFKLGMTTQICLAAERFAPNKRWHIDTVLRVL 449
Query: 445 EHAGDLVNIRVAHNLMRLIXXXXXXXXXXXXSQLRSSAVDSYLRIVGEPKLPSSFLQIIC 504
+ AG+ V + +RL+ +L++ V + S
Sbjct: 450 KLAGNYVRDEILSAFIRLV---------CHTPELQAYTVQKLFSALHHDFSQESLTLAAV 500
Query: 505 WVLGEYG---TADGKYSASYIIGKLYDVAEAHPTD------DTVRAYAISAILKIFAFEI 555
WV+GE+G G + + V E P D + + ++ +K F
Sbjct: 501 WVIGEFGDVLVQGGNFEDEEL------VREVQPKDVVDLLSSVLDSPYVNGHIKQFVLT- 553
Query: 556 ALGRKIDMLPE------CQSLIDELSASHSTDLQQRAYELQALL 593
+L + LP+ + +I +S ++QQR+ E +LL
Sbjct: 554 SLAKLHTRLPDSAQQNRIEQIIGSFESSVEVEIQQRSVEFSSLL 597
>Os02g0805000 Adaptin, N-terminal domain containing protein
Length = 489
Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/455 (25%), Positives = 226/455 (49%), Gaps = 11/455 (2%)
Query: 15 SQGGWGQSKEFLDLVKSIGEARSKAEEDRIISRELDHLKRRLAD--PDVPRRKMKELLLR 72
+ G + D++++I ++ AEE ++ RE ++ + + ++ R M +L+
Sbjct: 16 AMGPFSSGTRLRDMIRAIRACKTAAEERAVVRRECAEIREAIGENQQEIRHRNMAKLM-- 73
Query: 73 LVYAEMLGHDASFGHIHAVKMTHDESLPLKRTGYLAVSLFLDERHDLVILVVNTIQKDLR 132
+ MLG+ FG + +K+ P KR GYL + L LDER ++++LV N++++DL
Sbjct: 74 --FIHMLGYPTHFGQMECLKLIAAAGYPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLN 131
Query: 133 SDNYLVVCAALTAACRLIGEEAIPAVLPQVVELLAHPKEAVRKKAVMALHRFYQRSPSSV 192
N +V AL A + E + P+V L+ +KKA + R ++ P
Sbjct: 132 HSNQFIVGLALCALGNICSAEMARDLSPEVERLMRSRDVNTKKKAALCAIRIVRKVPDLA 191
Query: 193 SHLVSNFRKRLCDNDPGVM--GATLCPLYDLILEDPNSY--KDLVVSFVNILKQVAERRL 248
+ + L + G++ LC +D Y K+ V V IL+ V+
Sbjct: 192 ENFMGLASSLLKEKHHGILISAVQLCTELCKASKDALEYLRKNCVEGLVRILRDVSNSSY 251
Query: 249 PTSYDYHQMPAPFIQIKLLKILAVLGSGDKQASGNMYMVLGDIFRKGDTASNIGNAILYE 308
YD + PF+ I++LK++ +LG GD S M +L + K ++ N NAILYE
Sbjct: 252 APEYDVAGISDPFLHIRVLKLMRILGQGDADCSEYMNDILAQVATKNESNKNAANAILYE 311
Query: 309 CICCISSIFPNAKMLDAAAETTSKFLKSDSHNLKYMGIDALGRLIKINPDIAEEHQLAVI 368
C+ I I + + A +FL + +N++Y+ ++ L R I ++ + H+ ++
Sbjct: 312 CVQTIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMRAITVDTQAVQRHRTTIL 371
Query: 369 DCLEDPDDTLKRKTFELLYKMTKSTNVEVIVDRMIEYMINITDHHYKTEIASRCVELAEQ 428
+C++D D +++++ EL++ + TNV+ + +++Y+ + D +K ++ ++ + E+
Sbjct: 372 ECVKDADASIRKRALELVFLLVNDTNVKPLTKELVDYL-DSADPDFKEDLTAKICSIVEK 430
Query: 429 FAPSNQWFIQTMNKVFEHAGDLVNIRVAHNLMRLI 463
F+ W++ M KV AG+ V V H L+ +I
Sbjct: 431 FSQEKLWYLDQMFKVLSLAGNHVKDDVWHALVVVI 465
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,269,261
Number of extensions: 1298325
Number of successful extensions: 5555
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 5541
Number of HSP's successfully gapped: 4
Length of query: 950
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 840
Effective length of database: 11,292,261
Effective search space: 9485499240
Effective search space used: 9485499240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)