BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0908600 Os01g0908600|J043017F16
(159 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0908600 Amino acid transporter, transmembrane family p... 261 1e-70
Os07g0100800 Similar to Amino acid permease 125 9e-30
Os03g0644400 Amino acid permease 122 1e-28
>Os01g0908600 Amino acid transporter, transmembrane family protein
Length = 159
Score = 261 bits (667), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/136 (95%), Positives = 130/136 (95%)
Query: 24 YXXXXXXHQIDTDSWQQVGVLLVVGFNCAYVLSFSNLMMAPLGWGWGIACLLFIGAASWY 83
Y HQIDTDSWQQVGVLLVVGFNCAYVLSFSNLMMAPLGWGWGIACLLFIGAASWY
Sbjct: 24 YTTAATAHQIDTDSWQQVGVLLVVGFNCAYVLSFSNLMMAPLGWGWGIACLLFIGAASWY 83
Query: 84 ANWLLAGLHVIDGQRFIRYRDLMGFVFGRKMYYITWFLQFITLILGNMGFILLGGRALKV 143
ANWLLAGLHVIDGQRFIRYRDLMGFVFGRKMYYITWFLQFITLILGNMGFILLGGRALKV
Sbjct: 84 ANWLLAGLHVIDGQRFIRYRDLMGFVFGRKMYYITWFLQFITLILGNMGFILLGGRALKV 143
Query: 144 QNLLLIVSNIRLAVYL 159
QNLLLIVSNIRLAVYL
Sbjct: 144 QNLLLIVSNIRLAVYL 159
>Os07g0100800 Similar to Amino acid permease
Length = 458
Score = 125 bits (315), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 77/117 (65%)
Query: 31 HQIDTDSWQQVGVLLVVGFNCAYVLSFSNLMMAPLGWGWGIACLLFIGAASWYANWLLAG 90
HQI D W QVG +L G N AYVL +S +M PLGW G L+ A S YAN LLA
Sbjct: 44 HQISADPWYQVGFVLTTGVNSAYVLGYSGSVMVPLGWIGGTCGLILAAAISLYANALLAR 103
Query: 91 LHVIDGQRFIRYRDLMGFVFGRKMYYITWFLQFITLILGNMGFILLGGRALKVQNLL 147
LH I G+R IRYRDL G ++GRKMY +TW LQ++ L + N GFI+L G+ALK +L
Sbjct: 104 LHEIGGKRHIRYRDLAGHIYGRKMYSLTWALQYVNLFMINTGFIILAGQALKATYVL 160
>Os03g0644400 Amino acid permease
Length = 473
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 74/113 (65%)
Query: 31 HQIDTDSWQQVGVLLVVGFNCAYVLSFSNLMMAPLGWGWGIACLLFIGAASWYANWLLAG 90
HQI D W QVG +L G N AYVL +S +M PLGW G L+ A S YAN LLA
Sbjct: 59 HQISIDPWYQVGFILTTGVNSAYVLGYSASIMVPLGWIGGTCGLILAAAISMYANALLAH 118
Query: 91 LHVIDGQRFIRYRDLMGFVFGRKMYYITWFLQFITLILGNMGFILLGGRALKV 143
LH + G+R IRYRDL G ++GRKMY +TW LQ++ L + N G I+L G+ALK
Sbjct: 119 LHEVGGKRHIRYRDLAGHIYGRKMYSLTWALQYVNLFMINTGLIILAGQALKA 171
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.334 0.148 0.501
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,224,785
Number of extensions: 159339
Number of successful extensions: 460
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 3
Length of query: 159
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 66
Effective length of database: 12,179,899
Effective search space: 803873334
Effective search space used: 803873334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 152 (63.2 bits)