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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0908600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid transporter, transmembrane family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.96 (0.0733) R2 : 0.534
β1 : -3.42 (0.284) R2dD : 0.181 R2D : 0.0419
β2 : 2.9 (0.185) R2dC : 0.253 R2C : 0.207
β3 : -1.47 (0.213) R2dE : 0.0636 R2E : -0.0421
β4 : 2.87 (0.826) R2dD*C : 0.0124 R2D*C : -0.014
β5 : 5.6 (0.829) R2dD*E : 0.0612 R2D*E : -0.0895
γ1 : -2.16 (0.168) R2dN8 : 0.274 R2N8 : 0.0222
σ : 1.35
deviance : 822.81
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_____
C
peak time of C : 7.15
E
wheather : radiation
threshold : 10
memory length : 1397
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 2.06

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
822.81 1.35 6.96 -3.42 2.9 -1.47 2.87 5.6 -2.16 7.15 10 1397 15 2.06
903.99 1.4 6.94 -2.61 2.95 -1.55 2.77 -- -1.97 7.26 9.95 1450 15.1 2.8
843.94 1.35 6.96 -3.37 2.9 -1.47 -- 5.67 -2.16 7.19 9.971 1387 15 2.02
923.28 1.42 6.94 -2.46 2.98 -1.57 -- -- -1.97 7.42 9.948 1442 15.1 3.43
1289.3 1.67 6.97 -3.34 -- -1.53 -- 6.08 -2.15 -- 9.98 1433 15 2.15
956.43 1.45 6.93 -2.96 2.92 -- 2.89 -- -1.59 7.26 -- -- -- --
977.82 1.46 6.94 -2.89 2.92 -- -- -- -1.6 7.44 -- -- -- --
1084.41 1.53 6.97 -2.88 -- -1.72 -- -- -1.25 -- 39.9 664 14.7 1.84
1042.46 1.5 6.94 -- 2.94 -2.28 -- -- -1.64 7.34 9.951 1429 16.1 3.52
1431.13 1.77 7 -2.84 -- -- -- -- -1.55 -- -- -- -- --
1197.72 1.62 6.86 -- 2.89 -- -- -- -1.27 7.5 -- -- -- --
1276.72 1.66 6.97 -- -- -1.88 -- -- -1.26 -- 39.99 663 14.8 1.85
1644.24 1.89 6.93 -- -- -- -- -- -1.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 825.42 radiation 10.0 1440 < th dose independent rect. 15 2
3 838.19 wind 1.0 14400 < th dose dependent rect. 22 6
8 841.58 precipitation 0.1 43200 < th dose independent rect. 22 2
9 841.58 precipitation 0.1 43200 < th dose dependent rect. 22 2
10 841.98 radiation 10.0 1440 < th dose independent rect. 15 13
12 842.11 precipitation 0.1 43200 > th dose independent rect. 22 2
13 842.11 precipitation 0.1 43200 > th dose dependent rect. 22 2
14 842.21 radiation 10.0 1440 < th dose independent rect. 15 10
19 842.95 radiation 10.0 1440 < th dose independent rect. 15 7
24 844.14 wind 9.0 43200 > th dose independent rect. 16 3
25 844.56 precipitation 0.1 43200 > th dose dependent rect. 19 5
26 844.59 wind 9.0 43200 < th dose independent rect. 16 3
28 845.02 precipitation 0.1 43200 > th dose dependent rect. 17 7
32 846.81 radiation 40.0 43200 > th dose independent rect. 13 2
35 847.42 radiation 40.0 43200 > th dose independent rect. 13 19
52 847.87 radiation 10.0 43200 < th dose dependent rect. 7 10
53 847.93 precipitation 0.1 43200 < th dose independent rect. 19 5
54 847.93 precipitation 0.1 43200 < th dose dependent rect. 19 5
55 847.96 precipitation 0.1 43200 < th dose independent rect. 16 2
56 847.96 precipitation 0.1 43200 < th dose dependent rect. 16 2
57 848.06 precipitation 0.1 43200 > th dose independent rect. 19 5
59 848.59 precipitation 0.1 43200 > th dose dependent rect. 16 5
61 848.91 precipitation 0.1 43200 > th dose independent rect. 16 2
62 848.92 radiation 10.0 43200 > th dose independent rect. 13 20
63 849.28 radiation 10.0 43200 < th dose dependent rect. 7 1
66 849.84 atmosphere 1000.0 14400 > th dose dependent rect. 3 1
68 849.95 atmosphere 1000.0 14400 > th dose dependent rect. 24 1
72 850.16 atmosphere 1000.0 14400 > th dose dependent rect. 24 4
89 850.62 wind 1.0 14400 < th dose dependent rect. 19 11
108 851.32 precipitation 0.1 43200 > th dose dependent rect. 15 3
124 851.89 wind 1.0 14400 < th dose independent rect. 22 5
128 851.96 radiation 10.0 43200 < th dose dependent rect. 6 4
142 852.42 radiation 20.0 43200 > th dose independent rect. 12 4
146 852.45 atmosphere 1000.0 14400 > th dose dependent rect. 24 14
156 852.60 radiation 10.0 43200 > th dose independent sin 12 NA
170 852.74 radiation 20.0 43200 > th dose independent rect. 11 6
219 852.95 atmosphere 1000.0 14400 > th dose dependent rect. 12 2
221 852.96 atmosphere 1010.0 14400 < th dose independent rect. 6 1
222 852.96 atmosphere 1000.0 14400 > th dose dependent sin 6 NA
242 853.06 radiation 10.0 43200 < th dose dependent rect. 7 21
246 853.08 radiation 10.0 43200 < th dose dependent rect. 7 18
266 853.21 precipitation 0.1 43200 > th dose dependent rect. 20 1
271 853.27 radiation 20.0 43200 < th dose dependent rect. 10 6
273 853.27 precipitation 0.1 43200 > th dose dependent rect. 17 11
275 853.28 radiation 10.0 1440 < th dose independent sin 15 NA
316 853.59 radiation 20.0 43200 < th dose dependent rect. 13 3
318 853.61 atmosphere 1005.0 14400 > th dose independent rect. 14 2
325 853.68 wind 7.0 43200 > th dose dependent rect. 16 3
342 853.82 precipitation 0.1 43200 < th dose independent rect. 17 4
343 853.82 precipitation 0.1 43200 < th dose dependent rect. 17 4
369 853.98 radiation 20.0 43200 > th dose independent sin 17 NA
395 854.11 wind 1.0 14400 < th dose dependent rect. 17 13
412 854.20 atmosphere 1010.0 14400 > th dose independent rect. 6 1
418 854.23 atmosphere 1000.0 14400 > th dose dependent rect. 12 19
426 854.26 precipitation 0.1 43200 > th dose dependent rect. 19 9
468 854.38 atmosphere 1000.0 14400 > th dose dependent no NA NA
531 854.53 radiation 10.0 43200 < th dose dependent sin 2 NA
547 854.56 atmosphere 1000.0 14400 > th dose dependent rect. 3 23
558 854.60 precipitation 0.1 43200 > th dose independent rect. 17 4
616 854.86 radiation 10.0 43200 < th dose dependent rect. 21 19
622 854.87 radiation 10.0 43200 < th dose dependent rect. 24 16
627 854.89 radiation 40.0 43200 > th dose independent sin 14 NA
634 854.92 radiation 10.0 43200 < th dose dependent rect. 2 14
642 854.96 atmosphere 1015.0 14400 < th dose dependent rect. 24 1
827 855.89 radiation 40.0 1440 < th dose dependent rect. 11 1
870 856.13 radiation 20.0 43200 < th dose dependent rect. 14 1
888 856.26 atmosphere 1015.0 14400 < th dose dependent rect. 24 4
905 856.36 atmosphere 1015.0 14400 < th dose dependent rect. 3 1
935 856.45 precipitation 0.1 43200 < th dose independent rect. 17 7
937 856.45 precipitation 0.1 43200 < th dose dependent rect. 17 7
947 856.49 atmosphere 1015.0 14400 < th dose dependent rect. 12 1