Os07g0100800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amino acid permease.
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Os07g0100800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Amino acid permease.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.9 | 0.404 | 10.5 | -1.28 | 1.74 | 0.836 | 0.739 | -2.87 | -0.596 | 6.99 | 2.018 | 1459 | -- | -- |
| 84.34 | 0.428 | 10.5 | -0.942 | 1.75 | 0.976 | 0.633 | -- | -0.593 | 7.02 | 1.68 | 1461 | -- | -- |
| 75.28 | 0.404 | 10.5 | -1.27 | 1.75 | 0.824 | -- | -2.79 | -0.598 | 7.01 | 2.02 | 1452 | -- | -- |
| 83.55 | 0.426 | 10.5 | -1.03 | 1.76 | 1.14 | -- | -- | -0.584 | 7.01 | 0.7 | 1455 | -- | -- |
| 232.76 | 0.711 | 10.5 | -1.26 | -- | 1.08 | -- | -2.89 | -0.535 | -- | 2.087 | 1490 | -- | -- |
| 95.37 | 0.458 | 10.5 | -0.762 | 1.77 | -- | 0.577 | -- | -0.352 | 7.09 | -- | -- | -- | -- |
| 96.25 | 0.459 | 10.5 | -0.75 | 1.77 | -- | -- | -- | -0.353 | 7.1 | -- | -- | -- | -- |
| 232.53 | 0.713 | 10.5 | -0.732 | -- | 0.512 | -- | -- | -0.327 | -- | 0.8145 | 1490 | -- | -- |
| 104.49 | 0.476 | 10.5 | -- | 1.69 | 0.718 | -- | -- | -0.39 | 6.99 | 1.68 | 1477 | -- | -- |
| 262.01 | 0.756 | 10.5 | -0.716 | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
| 111.09 | 0.493 | 10.4 | -- | 1.77 | -- | -- | -- | -0.27 | 7.13 | -- | -- | -- | -- |
| 246.67 | 0.734 | 10.5 | -- | -- | 0.506 | -- | -- | -0.246 | -- | 0.8145 | 1490 | -- | -- |
| 275.54 | 0.775 | 10.5 | -- | -- | -- | -- | -- | -0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 2 | 73.59 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 3 | 73.63 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 6 | 73.65 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 8 | 73.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 16 | 73.74 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 17 | 73.74 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 27 | 73.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 29 | 73.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 33 | 73.88 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 46 | 74.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 107 | 74.42 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 119 | 74.50 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 122 | 74.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 146 | 74.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 164 | 74.70 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 173 | 74.74 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 184 | 74.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 185 | 74.82 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 194 | 74.88 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 254 | 75.21 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 292 | 75.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 294 | 75.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 301 | 75.44 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 474 | 75.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 482 | 76.07 | radiation | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 488 | 76.15 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 550 | 76.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 574 | 76.67 | humidity | 90 | 720 | > th | dose dependent | sin | 19 | NA |
| 604 | 76.80 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 703 | 77.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 833 | 77.80 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 6 |