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Os03g0644400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid permease.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0197) R2 : 0.782
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.93 (0.0489) R2dC : 0.746 R2C : 0.745
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.325 (0.0415) R2dN8 : 0.0379 R2N8 : 0.0366
σ : 0.372
deviance : 63.16
__
_____
C
peak time of C : 14.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.7 0.331 11.1 -0.288 1.93 -0.106 -1.19 2.67 -0.347 14.9 1000 27 -- --
50.28 0.33 11.2 -0.455 1.93 0.39 -1.13 -- -0.339 14.9 999.9 60 -- --
54.5 0.344 11.1 -0.336 1.93 -0.0892 -- 2.53 -0.349 14.9 1000 27 -- --
54.62 0.344 11.2 -0.488 1.92 0.377 -- -- -0.347 14.9 999.9 60 -- --
265.76 0.763 11.1 0.0515 -- -1.18 -- 9.28 -0.391 -- 1000 56 -- --
54.3 0.345 11.2 -0.397 1.93 -- -1.11 -- -0.366 14.9 -- -- -- --
58.46 0.358 11.2 -0.422 1.93 -- -- -- -0.372 14.9 -- -- -- --
265.43 0.759 11.2 -0.565 -- 0.456 -- -- -0.376 -- 1002 98 -- --
60.72 0.363 11.2 -- 1.93 0.304 -- -- -0.3 14.9 999.7 63 -- --
272.8 0.772 11.2 -0.505 -- -- -- -- -0.422 -- -- -- -- --
63.16 0.372 11.2 -- 1.93 -- -- -- -0.325 14.9 -- -- -- --
272.78 0.769 11.2 -- -- 0.403 -- -- -0.307 -- 1003 152 -- --
279.51 0.78 11.2 -- -- -- -- -- -0.366 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.93 precipitation 0.1 270 < th dose independent rect. 24 11
2 42.93 precipitation 0.1 270 < th dose dependent rect. 24 11
3 43.24 wind 9.0 270 < th dose independent rect. 24 11
4 43.30 temperature 10.0 270 > th dose independent rect. 24 11
5 43.30 atmosphere 995.0 270 > th dose independent rect. 24 11
6 43.30 temperature 10.0 270 > th dose independent rect. 11 13
7 43.31 atmosphere 1015.0 270 < th dose independent rect. 24 11
8 43.55 precipitation 0.1 270 < th dose independent rect. 11 13
9 43.55 precipitation 0.1 270 < th dose dependent rect. 11 13
10 43.61 humidity 50.0 270 > th dose independent rect. 24 11
12 43.69 wind 9.0 270 < th dose independent rect. 11 13
13 44.29 atmosphere 1000.0 90 > th dose dependent rect. 16 5
15 44.31 atmosphere 1000.0 270 > th dose dependent rect. 16 3
17 44.38 atmosphere 1005.0 90 > th dose independent rect. 16 5
19 44.56 radiation 40.0 720 < th dose independent rect. 19 14
22 44.61 atmosphere 1005.0 10 > th dose dependent rect. 17 4
23 44.63 temperature 30.0 270 < th dose independent rect. 24 11
24 44.67 radiation 30.0 270 < th dose independent rect. 15 13
25 44.69 wind 1.0 270 > th dose independent rect. 11 13
33 44.90 wind 1.0 270 > th dose independent rect. 4 11
34 44.94 humidity 50.0 270 > th dose independent rect. 4 11
36 44.95 wind 9.0 720 < th dose independent rect. 21 10
38 44.99 wind 9.0 720 < th dose independent rect. 19 14
44 45.12 radiation 30.0 720 < th dose independent rect. 21 10
47 45.13 temperature 10.0 720 > th dose independent rect. 21 10
48 45.13 temperature 30.0 720 < th dose independent rect. 21 10
49 45.13 humidity 50.0 720 > th dose independent rect. 21 10
51 45.13 atmosphere 995.0 720 > th dose independent rect. 21 10
53 45.13 temperature 10.0 720 > th dose independent rect. 7 14
56 45.19 temperature 10.0 720 > th dose independent rect. 9 10
57 45.19 atmosphere 1015.0 720 < th dose independent rect. 9 10
58 45.19 temperature 10.0 720 > th dose independent rect. 19 14
59 45.19 humidity 50.0 720 > th dose independent rect. 19 14
60 45.19 atmosphere 995.0 720 > th dose independent rect. 19 14
61 45.25 atmosphere 995.0 270 > th dose independent rect. 15 13
63 45.29 precipitation 0.1 720 < th dose independent rect. 9 10
64 45.29 precipitation 0.1 720 < th dose dependent rect. 9 10
79 45.48 atmosphere 995.0 720 > th dose independent rect. 16 20
81 45.55 atmosphere 1000.0 90 > th dose independent rect. 1 20
82 45.56 temperature 15.0 270 > th dose independent rect. 15 13
89 45.60 temperature 15.0 720 > th dose independent rect. 16 3
96 45.66 temperature 30.0 90 < th dose independent rect. 16 5
100 45.67 atmosphere 1000.0 270 > th dose independent rect. 23 22
103 45.71 temperature 25.0 720 < th dose independent rect. 24 3
114 45.80 temperature 10.0 270 > th dose independent rect. 4 11
115 45.80 atmosphere 1015.0 270 < th dose independent rect. 4 11
123 45.90 atmosphere 1000.0 90 > th dose independent rect. 17 12
126 45.92 atmosphere 1000.0 90 > th dose independent rect. 8 13
128 45.94 humidity 70.0 720 > th dose independent rect. 19 5
132 45.96 precipitation 0.1 720 < th dose independent rect. 7 14
133 45.96 radiation 40.0 720 < th dose dependent rect. 21 10
134 45.96 precipitation 0.1 720 < th dose dependent rect. 7 14
136 45.98 precipitation 0.1 270 < th dose independent rect. 4 11
138 45.98 precipitation 0.1 270 < th dose dependent rect. 4 11
145 46.01 radiation 40.0 90 < th dose dependent rect. 21 12
147 46.03 radiation 40.0 720 < th dose independent rect. 3 6
148 46.03 atmosphere 995.0 720 > th dose independent rect. 17 10
149 46.03 radiation 10.0 90 < th dose dependent rect. 16 5
154 46.07 atmosphere 1015.0 270 < th dose independent rect. 11 13
158 46.08 wind 7.0 720 < th dose independent rect. 3 6
159 46.08 atmosphere 1000.0 30 > th dose independent rect. 21 23
162 46.11 wind 9.0 10 < th dose independent rect. 2 10
163 46.13 humidity 60.0 90 > th dose independent rect. 17 4
171 46.17 wind 1.0 720 > th dose independent rect. 15 6
174 46.18 precipitation 0.1 270 < th dose independent rect. 15 13
176 46.18 precipitation 0.1 270 < th dose dependent rect. 15 13
181 46.24 wind 5.0 720 < th dose independent rect. 4 3
184 46.24 wind 9.0 270 < th dose independent rect. 4 11
185 46.24 atmosphere 995.0 270 > th dose independent rect. 4 11
191 46.25 precipitation 0.1 10 < th dose independent rect. 2 10
194 46.25 precipitation 0.1 10 < th dose dependent rect. 2 10
196 46.27 atmosphere 1015.0 720 < th dose independent rect. 7 14
199 46.29 atmosphere 1000.0 10 > th dose independent rect. 2 10
203 46.30 precipitation 0.1 10 < th dose independent rect. 12 14
204 46.30 precipitation 0.1 10 < th dose dependent rect. 12 14
205 46.31 wind 9.0 270 < th dose independent rect. 15 13
208 46.31 radiation 1.0 10 < th dose dependent rect. 2 19
220 46.38 temperature 30.0 720 < th dose independent rect. 19 14
221 46.39 precipitation 0.1 720 < th dose independent rect. 21 10
223 46.39 precipitation 0.1 720 < th dose dependent rect. 21 10
229 46.43 precipitation 0.1 720 < th dose independent rect. 16 20
233 46.43 precipitation 0.1 720 < th dose dependent rect. 16 20
235 46.45 temperature 10.0 10 > th dose independent rect. 2 10
238 46.45 atmosphere 1015.0 10 < th dose independent rect. 2 10
240 46.45 temperature 10.0 10 > th dose independent rect. 12 14
254 46.50 wind 9.0 10 < th dose independent rect. 12 14
259 46.52 temperature 10.0 720 > th dose independent rect. 11 5
260 46.52 atmosphere 1015.0 720 < th dose independent rect. 11 5
261 46.52 precipitation 0.1 720 < th dose independent rect. 23 5
262 46.52 radiation 40.0 720 < th dose independent rect. 15 6
264 46.52 temperature 10.0 720 > th dose independent rect. 16 19
265 46.52 precipitation 0.1 720 < th dose dependent rect. 23 5
270 46.54 precipitation 0.1 720 < th dose independent rect. 7 5
271 46.54 humidity 60.0 720 > th dose independent rect. 3 6
272 46.54 precipitation 0.1 720 < th dose independent rect. 23 13
273 46.54 precipitation 0.1 720 < th dose dependent rect. 7 5
274 46.54 precipitation 0.1 720 < th dose dependent rect. 23 13
282 46.57 wind 9.0 720 < th dose independent rect. 12 4
285 46.58 radiation 30.0 720 < th dose independent rect. 4 4
286 46.58 wind 9.0 720 < th dose independent rect. 7 5
287 46.58 wind 9.0 720 < th dose independent rect. 19 5
293 46.59 temperature 10.0 720 > th dose independent rect. 7 5
294 46.59 atmosphere 995.0 720 > th dose independent rect. 7 5
295 46.59 atmosphere 1015.0 720 < th dose independent rect. 7 5
300 46.59 temperature 10.0 720 > th dose independent rect. 12 19
301 46.59 precipitation 0.1 720 < th dose independent rect. 24 19
304 46.59 precipitation 0.1 720 < th dose dependent rect. 24 19
308 46.60 temperature 10.0 720 > th dose independent rect. 21 18
312 46.60 radiation 40.0 270 < th dose dependent rect. 19 12
313 46.61 temperature 25.0 720 < th dose independent rect. 24 1
315 46.62 temperature 10.0 720 > th dose independent rect. 12 11
320 46.62 atmosphere 995.0 720 > th dose independent rect. 23 13
328 46.63 wind 1.0 10 > th dose independent rect. 12 14
332 46.64 radiation 1.0 90 < th dose independent rect. 2 19
338 46.66 humidity 50.0 90 > th dose dependent rect. 17 4
353 46.69 radiation 30.0 720 < th dose independent rect. 16 3
354 46.69 precipitation 0.1 720 < th dose independent rect. 15 6
356 46.69 humidity 60.0 90 > th dose independent rect. 21 19
357 46.69 precipitation 0.1 720 < th dose dependent rect. 15 6
358 46.70 temperature 10.0 720 > th dose independent rect. 19 5
359 46.70 temperature 10.0 720 > th dose independent rect. 23 5
360 46.70 temperature 30.0 720 < th dose independent rect. 19 5
362 46.70 humidity 50.0 720 > th dose independent rect. 19 5
363 46.70 humidity 50.0 720 > th dose independent rect. 23 5
367 46.70 atmosphere 995.0 720 > th dose independent rect. 19 5
368 46.70 atmosphere 995.0 720 > th dose independent rect. 23 5
369 46.70 radiation 1.0 720 < th dose independent rect. 19 5
374 46.70 radiation 1.0 720 < th dose independent rect. 23 5
379 46.70 temperature 10.0 720 > th dose independent rect. 4 19
380 46.70 temperature 10.0 720 > th dose independent rect. 24 19
387 46.70 radiation 1.0 720 < th dose dependent rect. 19 5
392 46.70 radiation 1.0 720 < th dose dependent rect. 23 5
399 46.71 precipitation 0.1 720 < th dose independent rect. 16 3
400 46.71 radiation 10.0 90 < th dose independent rect. 16 5
402 46.71 temperature 10.0 720 > th dose independent rect. 3 6
404 46.71 atmosphere 995.0 720 > th dose independent rect. 3 6
408 46.71 temperature 10.0 720 > th dose independent rect. 9 18
409 46.71 temperature 15.0 720 > th dose independent rect. 23 22
410 46.71 precipitation 0.1 720 < th dose dependent rect. 16 3
416 46.72 humidity 50.0 720 > th dose dependent rect. 24 4
417 46.73 wind 9.0 720 < th dose independent rect. 23 5
431 46.76 wind 1.0 720 > th dose independent rect. 16 3
446 46.79 wind 9.0 10 < th dose dependent rect. 2 10
449 46.81 radiation 1.0 720 > th dose independent rect. 7 5
452 46.81 atmosphere 1015.0 10 < th dose dependent rect. 12 14
493 46.85 atmosphere 1015.0 720 < th dose independent rect. 16 3
497 46.85 temperature 10.0 720 > th dose independent rect. 19 21
499 46.85 radiation 20.0 90 < th dose dependent rect. 16 13
506 46.88 radiation 1.0 720 > th dose independent rect. 9 2
521 46.90 precipitation 0.1 720 < th dose independent rect. 11 5
522 46.90 wind 1.0 10 > th dose independent rect. 21 21
523 46.90 precipitation 0.1 720 < th dose dependent rect. 11 5
529 46.92 temperature 10.0 720 > th dose independent rect. 4 3
530 46.92 temperature 30.0 720 < th dose independent rect. 4 3
531 46.92 humidity 50.0 720 > th dose independent rect. 4 3
533 46.92 atmosphere 995.0 720 > th dose independent rect. 4 3
534 46.92 atmosphere 1015.0 720 < th dose independent rect. 4 3
541 46.92 temperature 10.0 720 > th dose independent rect. 7 21
553 46.94 precipitation 0.1 720 < th dose independent rect. 4 3
556 46.94 radiation 20.0 720 < th dose independent rect. 17 10
562 46.94 precipitation 0.1 720 < th dose dependent rect. 4 3
566 46.95 radiation 20.0 90 < th dose independent rect. 21 12
571 46.96 temperature 10.0 270 > th dose independent rect. 19 12
572 46.96 temperature 30.0 270 < th dose independent rect. 19 12
573 46.96 humidity 50.0 270 > th dose independent rect. 19 12
574 46.96 atmosphere 995.0 270 > th dose independent rect. 19 12
575 46.96 atmosphere 1015.0 270 < th dose independent rect. 7 12
578 46.96 precipitation 0.1 720 < th dose independent rect. 9 18
580 46.96 precipitation 0.1 720 < th dose dependent rect. 9 18
612 47.00 temperature 10.0 720 > th dose independent rect. 17 10
618 47.00 temperature 10.0 720 > th dose independent rect. 3 14
635 47.01 wind 9.0 720 < th dose independent rect. 19 21
643 47.02 temperature 30.0 90 < th dose independent rect. 1 20
661 47.04 atmosphere 1000.0 720 > th dose independent rect. 9 2
672 47.05 atmosphere 995.0 270 > th dose independent rect. 11 13
674 47.05 atmosphere 995.0 720 > th dose independent rect. 8 20
677 47.06 wind 9.0 720 < th dose independent rect. 12 19
680 47.07 radiation 10.0 270 < th dose independent rect. 17 1
683 47.07 humidity 50.0 270 > th dose independent rect. 19 21
685 47.08 wind 7.0 720 < th dose independent rect. 21 2
691 47.09 precipitation 0.1 720 < th dose independent rect. 16 11
696 47.09 precipitation 0.1 720 < th dose dependent rect. 16 11
724 47.12 humidity 50.0 90 > th dose dependent rect. 21 18
726 47.13 temperature 25.0 30 > th dose independent rect. 18 3
730 47.13 temperature 10.0 1440 > th dose independent rect. 3 10
733 47.13 atmosphere 995.0 1440 > th dose independent rect. 3 10
736 47.13 temperature 15.0 90 > th dose independent rect. 9 12
739 47.13 temperature 10.0 1440 > th dose independent rect. 13 14
758 47.15 precipitation 0.1 720 < th dose independent rect. 8 20
759 47.15 precipitation 0.1 720 < th dose dependent rect. 8 20
777 47.16 atmosphere 1015.0 90 < th dose independent rect. 9 12
780 47.16 wind 9.0 720 < th dose independent rect. 21 18
782 47.16 temperature 15.0 720 > th dose independent rect. 11 22
790 47.17 humidity 50.0 14400 > th dose independent rect. 19 3
796 47.18 temperature 15.0 720 > th dose independent rect. 9 2
797 47.18 precipitation 0.1 720 < th dose independent rect. 9 2
813 47.18 precipitation 0.1 720 < th dose dependent rect. 9 2
825 47.20 wind 9.0 720 < th dose independent rect. 9 2
827 47.20 wind 1.0 270 > th dose independent rect. 20 11
836 47.21 atmosphere 1015.0 720 < th dose independent rect. 9 2
840 47.21 wind 1.0 270 > th dose independent rect. 19 21
848 47.22 humidity 50.0 10 > th dose independent rect. 12 14
849 47.22 humidity 50.0 270 > th dose dependent rect. 21 2
853 47.23 atmosphere 1015.0 10 < th dose independent rect. 12 14
866 47.25 precipitation 0.1 270 < th dose independent rect. 19 12
870 47.25 precipitation 0.1 270 < th dose dependent rect. 19 12
886 47.29 radiation 10.0 90 < th dose independent rect. 16 13
887 47.29 wind 9.0 720 < th dose independent rect. 16 20
890 47.30 temperature 10.0 720 > th dose independent rect. 21 2
891 47.30 temperature 30.0 720 < th dose independent rect. 21 2
892 47.30 humidity 50.0 720 > th dose independent rect. 21 2
895 47.30 atmosphere 995.0 720 > th dose independent rect. 21 2
896 47.30 radiation 1.0 720 < th dose independent rect. 21 2
910 47.30 radiation 1.0 720 < th dose dependent rect. 21 2
918 47.31 wind 9.0 720 < th dose independent rect. 16 3
924 47.31 radiation 1.0 14400 < th dose dependent rect. 19 3
947 47.34 wind 9.0 90 < th dose independent rect. 9 12
951 47.35 wind 9.0 270 < th dose independent rect. 7 13
961 47.36 humidity 50.0 90 > th dose dependent rect. 21 5
965 47.37 humidity 50.0 270 > th dose independent rect. 11 13
976 47.39 wind 1.0 720 > th dose independent rect. 12 4
981 47.40 humidity 50.0 720 > th dose independent rect. 7 5
999 47.42 temperature 10.0 90 > th dose independent rect. 17 4