BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0908200 Os01g0908200|AK067269
(347 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0908200 BTB domain containing protein 528 e-150
Os04g0482300 BTB domain containing protein 189 3e-48
Os01g0893400 BTB domain containing protein 181 5e-46
Os02g0596700 138 5e-33
>Os01g0908200 BTB domain containing protein
Length = 347
Score = 528 bits (1361), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/347 (78%), Positives = 274/347 (78%)
Query: 1 MCEXXXXXXXXXXXXXXXXITSSGRRRIPAHSTVLASASPVLESILQRRLKKEXXXXXXX 60
MCE ITSSGRRRIPAHSTVLASASPVLESILQRRLKKE
Sbjct: 1 MCEGVRAAGDAAAAADVDVITSSGRRRIPAHSTVLASASPVLESILQRRLKKERDAAAGG 60
Query: 61 XXXXXXXXLIRGVTDDAAAAFVRLLYAGSSGDEEEIDEKSAAQMLVLAHAYRVPWLKRRC 120
LIRGVTDDAAAAFVRLLYAGSSGDEEEIDEKSAAQMLVLAHAYRVPWLKRRC
Sbjct: 61 GKVRRAVVLIRGVTDDAAAAFVRLLYAGSSGDEEEIDEKSAAQMLVLAHAYRVPWLKRRC 120
Query: 121 EGAIGSRLTAESVVDTMQLAALCDAPQLHLRCTRLLAKEFKAVEKTEAWRFLQENDPWLE 180
EGAIGSRLTAESVVDTMQLAALCDAPQLHLRCTRLLAKEFKAVEKTEAWRFLQENDPWLE
Sbjct: 121 EGAIGSRLTAESVVDTMQLAALCDAPQLHLRCTRLLAKEFKAVEKTEAWRFLQENDPWLE 180
Query: 181 LDILQRLHDADLXXXXXXXXXAEQGVYVELSEAMDCLSHICTEGCTEVGPVGRXXXXXXX 240
LDILQRLHDADL AEQGVYVELSEAMDCLSHICTEGCTEVGPVGR
Sbjct: 181 LDILQRLHDADLRRRKWRRKRAEQGVYVELSEAMDCLSHICTEGCTEVGPVGRAPAAAPC 240
Query: 241 XXXXXXCRGLQLLIRHFSRCHRTSCPRCQRMWQLLRLHAALCDLPDGHCNTPLCMQFRRX 300
CRGLQLLIRHFSRCHRTSCPRCQRMWQLLRLHAALCDLPDGHCNTPLCMQFRR
Sbjct: 241 PAYATACRGLQLLIRHFSRCHRTSCPRCQRMWQLLRLHAALCDLPDGHCNTPLCMQFRRK 300
Query: 301 XXXXXXXXXXXXXXXXXXXWGLLVKKVRVARAMSSLGKRRQMSCSQC 347
WGLLVKKVRVARAMSSLGKRRQMSCSQC
Sbjct: 301 EEEKAAAKAKAKAGDDDDKWGLLVKKVRVARAMSSLGKRRQMSCSQC 347
>Os04g0482300 BTB domain containing protein
Length = 355
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 179/336 (53%), Gaps = 40/336 (11%)
Query: 20 ITSSGRRRIPAHSTVLASASPVLESILQRRLKKEXXXXXXXXXXXXXXXLIRGVTDDAAA 79
+TS G+ I AHS VL +ASPVLE +++R + + GV+ DA
Sbjct: 21 VTSDGKS-IAAHSFVLGTASPVLERMIERARRGWNAECTIR---------VLGVSSDAVF 70
Query: 80 AFVRLLYAGS-SGDEEEIDEKSAAQMLVLAHAYRVPWLKRRCEGAIGSRLTAESVVDTMQ 138
AF++LLYA + ++EE+ Q+L L+HAYR+ WLKR E ++ +RLT E VD ++
Sbjct: 71 AFLQLLYASRVTPEDEEVVTAHGPQLLALSHAYRIGWLKRAAEASVTARLTPEHAVDMLK 130
Query: 139 LAALCDAPQLHLRCTRLLAKEFKAVEKTEAWRFLQENDPWLELDILQRLHDADLXXXXXX 198
LA LCDAP+L+LRC RL AK+F AVE++E WRF + +D LEL+ILQ L DAD
Sbjct: 131 LARLCDAPRLYLRCARLAAKDFAAVERSEGWRFARRHDAALELEILQLLEDADQRRERWA 190
Query: 199 XXXAEQGVYVELSEAMDCLSHICT-EGCTEVGPVGRXXXXXXXXXXXXXCRGLQLLIRHF 257
A + Y +L EAMD L HI + +GC+ CRGL+LL+RH+
Sbjct: 191 RERASREAYRQLGEAMDSLEHIFSDDGCSCA------DADADADTDAPPCRGLRLLMRHY 244
Query: 258 SRCHR------TSCPRCQRMWQLLRLHAALCDLPDGH------CNTPLCMQFRRXXXXXX 305
+ C C RC+RM QL RLHA++CD H C PLC F+
Sbjct: 245 ATCGARKAAPGGGCTRCKRMVQLFRLHASVCDRAAPHDDGDRPCRVPLCSHFK------- 297
Query: 306 XXXXXXXXXXXXXXWGLLVKKVRVARAMSSLGKRRQ 341
W LLVKKV ARAMS L R+
Sbjct: 298 ---GKMRAEKADKTWRLLVKKVTRARAMSRLAAGRE 330
>Os01g0893400 BTB domain containing protein
Length = 413
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 169/328 (51%), Gaps = 27/328 (8%)
Query: 20 ITSSGRRRIPAHSTVLASASPVLESILQRRLKKEXXXXXXXXXXXXXXXLIRGVTDDAAA 79
+T G I +HS V+ SPVL ++L+ LI GV +A
Sbjct: 103 LTEDGNE-IMSHSCVVGIKSPVLRAMLEE----------AKVQGGIRHILIPGVPSEAVH 151
Query: 80 AFVRLLYAGSSGDEEEIDEKSAAQMLVLAHAYRVPWLKRRCEGAI-GSRLTAESVVDTMQ 138
F+R LY SS E+ ++ +LVL+H + VP LKR C + S L+ E+VVD +Q
Sbjct: 152 VFIRFLY--SSRFEQYQMKRYVLHLLVLSHVFSVPSLKRVCINQLETSLLSPENVVDILQ 209
Query: 139 LAALCDAPQLHLRCTRLLAKEFKAVEKTEAWRFLQENDPWLELDILQRLHDADLXXXXXX 198
LA LCDAP+L L CTR++ +FKA+ +TE WR +++ +P LE ++L+ L + D
Sbjct: 210 LARLCDAPRLSLVCTRMIIGDFKAITQTEGWRVMRQANPSLEQELLESLVEEDTKRQERA 269
Query: 199 XXXAEQGVYVELSEAMDCLSHICTEGCTEVGPVGRXXXXXXXXXXXXXCRGLQLLIRHFS 258
E VY++L EAM+ L HIC +GC +GP + C+G++LL+RHFS
Sbjct: 270 RRLEENKVYLQLHEAMEALIHICRDGCRTIGPRDQTLKSSQAVCRFPACKGIELLLRHFS 329
Query: 259 RCHR---TSCPRCQRMWQLLRLHAALCDLPDGHCNTPLCMQFRRXXXXXXXXXXXXXXXX 315
C C C+R+WQLL LH+ +C + C+ PLC F+
Sbjct: 330 ACKMRVPGGCANCKRIWQLLELHSRMCSALET-CHVPLCRHFKE--------KMQHLSRK 380
Query: 316 XXXXWGLLVKKVRVARA-MSSLGKRRQM 342
W LLV KV ++A SS+ +RR+
Sbjct: 381 EEAKWNLLVSKVLESKATTSSISERRKF 408
>Os02g0596700
Length = 361
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 156/331 (47%), Gaps = 42/331 (12%)
Query: 28 IPAHSTVLASASPVLESILQRRLKKEXXXXXXXXXXXXXXXLIRGVTDDAAAAFVRLLYA 87
I AHS+VLASASPVLE ++++ + I G + A F+R LYA
Sbjct: 27 IRAHSSVLASASPVLERMIEQAPRGGVVP-------------IAGASTGAVVVFLRFLYA 73
Query: 88 GSSGDEEEIDEKS----------AAQMLVLAHAYRVPW-LKRRCEGAIGSRLTAESVVDT 136
S + A ++ LAHAYRV LKRR E A+ +R+ AE VD
Sbjct: 74 ASVRGAAAAAAAAEWEEAALAEHGAALMALAHAYRVAGPLKRRAEEAVAARVAAEGAVDA 133
Query: 137 MQLAALCDAPQLHLRCTRLLAKEFKAVEKTEAWRFLQENDPWLELDILQRLHDADLXXXX 196
M+LAALCDAP+L+L C RL +E AV ++E WRF +D L D+LQ + DAD
Sbjct: 134 MKLAALCDAPRLYLWCARLAGRELAAVRESEGWRFAARHDAALRADLLQLIRDADQRKER 193
Query: 197 XXXXXAEQGVYVELSEAMDCLSHI---CTEGCTEVGPVGRXXXXXXXXXXXXXCRGLQLL 253
QGVY++LS+AM L + G P R RGL L
Sbjct: 194 WGRERGSQGVYLQLSDAMAALERVFARAAHGSPPPLPPPRTGQCCRMASPCAHRRGLLQL 253
Query: 254 IRH-FSRCHR---TSCPRCQRMWQLLRLHAALCDLP-DGHCNTPLCMQFRRXXXXXXXXX 308
RH F+ C R C C+R + LLRLH+++CD D C PLC F+
Sbjct: 254 ARHFFAGCGRRVAGGCTPCRRFFLLLRLHSSVCDKSDDDSCGVPLCSNFK---------- 303
Query: 309 XXXXXXXXXXXWGLLVKKVRVARAMSSLGKR 339
W LLVKKV AR MS+ KR
Sbjct: 304 TNMEKGKVDKTWKLLVKKVMRARVMSAWAKR 334
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,131,852
Number of extensions: 300917
Number of successful extensions: 988
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 974
Number of HSP's successfully gapped: 4
Length of query: 347
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 245
Effective length of database: 11,709,973
Effective search space: 2868943385
Effective search space used: 2868943385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)