BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0898900 Os01g0898900|AK120093
(402 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0898900 Nucleotide-sugar transporter family protein 795 0.0
Os02g0604300 Nucleotide-sugar transporter family protein 586 e-167
Os04g0490600 Nucleotide-sugar transporter family protein 399 e-111
Os06g0523400 Nucleotide-sugar transporter family protein 132 4e-31
Os07g0573700 Nucleotide-sugar transporter family protein 117 2e-26
>Os01g0898900 Nucleotide-sugar transporter family protein
Length = 402
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/402 (96%), Positives = 389/402 (96%)
Query: 1 MSGEVECRVCHAKVQVPMAAAAVSKAYDIHRSSVSSRQRALNVLLVSGDCVLAGLQPILV 60
MSGEVECRVCHAKVQVPMAAAAVSKAYDIHRSSVSSRQRALNVLLVSGDCVLAGLQPILV
Sbjct: 1 MSGEVECRVCHAKVQVPMAAAAVSKAYDIHRSSVSSRQRALNVLLVSGDCVLAGLQPILV 60
Query: 61 YMCKVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVSTFMQAARNNV 120
YMCKVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVSTFMQAARNNV
Sbjct: 61 YMCKVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVSTFMQAARNNV 120
Query: 121 LLAVPALFYAINNYMKFVMQLYFNPATVKMLGNXXXXXXXXXXXXXMRRRFSTIQWEALA 180
LLAVPALFYAINNYMKFVMQLYFNPATVKMLGN MRRRFSTIQWEALA
Sbjct: 121 LLAVPALFYAINNYMKFVMQLYFNPATVKMLGNLKVLVIAVLLKVIMRRRFSTIQWEALA 180
Query: 181 LLLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKALKSQFDTSIY 240
LLLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKALKSQFDTSIY
Sbjct: 181 LLLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKALKSQFDTSIY 240
Query: 241 LQNLFLYGYGAIFNFLGLVITAIIQGPSSFNILEGHSKATMFLICNNAAQGILSSFFFKY 300
LQNLFLYGYGAIFNFLGLVITAIIQGPSSFNILEGHSKATMFLICNNAAQGILSSFFFKY
Sbjct: 241 LQNLFLYGYGAIFNFLGLVITAIIQGPSSFNILEGHSKATMFLICNNAAQGILSSFFFKY 300
Query: 301 ADTILKKYSSTIATIFTGVASAVLFGHTLTINFVLAISIVIISMHQYLSNQIKDEVPSSK 360
ADTILKKYSSTIATIFTGVASAVLFGHTLTINFVLAISIVIISMHQYLSNQIKDEVPSSK
Sbjct: 301 ADTILKKYSSTIATIFTGVASAVLFGHTLTINFVLAISIVIISMHQYLSNQIKDEVPSSK 360
Query: 361 IEMGDAHEHRSKESVVVNVSDSIATEAKHRHGTDERQPLLPV 402
IEMGDAHEHRSKESVVVNVSDSIATEAKHRHGTDERQPLLPV
Sbjct: 361 IEMGDAHEHRSKESVVVNVSDSIATEAKHRHGTDERQPLLPV 402
>Os02g0604300 Nucleotide-sugar transporter family protein
Length = 405
Score = 586 bits (1510), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/402 (69%), Positives = 330/402 (82%), Gaps = 3/402 (0%)
Query: 2 SGEVECRVCHAKVQVPMAAAAVSKAYDIHRSSVSSRQRALNVLLVSGDCVLAGLQPILVY 61
+G VEC VC +++ VP + +VS+AYD HRS +SS+ RALNVLLV GDC+L GLQPILV+
Sbjct: 4 NGVVECSVCRSRLVVP-SPRSVSRAYDKHRSKISSKFRALNVLLVVGDCILVGLQPILVF 62
Query: 62 MCKVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVSTFMQAARNNVL 121
M KVDGKF+FSP+SVNFLTE+TK++FAI+ML IQ+R+ KVGEKP L STF+QAARNN L
Sbjct: 63 MSKVDGKFQFSPISVNFLTEVTKVVFAIVMLIIQSRKQKVGEKPLLARSTFIQAARNNAL 122
Query: 122 LAVPALFYAINNYMKFVMQLYFNPATVKMLGNXXXXXXXXXXXXXMRRRFSTIQWEALAL 181
LAVPAL YAINNY+KF+MQLYFNP+TVKML N M+RRFS IQWEALAL
Sbjct: 123 LAVPALLYAINNYLKFIMQLYFNPSTVKMLSNLKVLVIAVLLKFIMKRRFSVIQWEALAL 182
Query: 182 LLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKALKSQFDTSIYL 241
LLIGIS+NQL+++P G++ GLPV A AY+YTL FVTVP+LASVYNE ALKSQ+DTSIYL
Sbjct: 183 LLIGISINQLRTVPAGNTAFGLPVTAIAYIYTLIFVTVPSLASVYNEYALKSQYDTSIYL 242
Query: 242 QNLFLYGYGAIFNFLGLVITAIIQGPSSFNILEGHSKATMFLICNNAAQGILSSFFFKYA 301
QNLFLYGYGAIFNFLG++ TA+ QGP SFNIL GHS+ATMFLICNNAAQGILSSFFFKYA
Sbjct: 243 QNLFLYGYGAIFNFLGILGTALFQGPESFNILRGHSRATMFLICNNAAQGILSSFFFKYA 302
Query: 302 DTILKKYSSTIATIFTGVASAVLFGHTLTINFVLAISIVIISMHQYLS--NQIKDEVPSS 359
DTILKKYSST+ATIFTG+ASA GHTLTINF+L IS+V ISMHQ+ S + KD+ P+
Sbjct: 303 DTILKKYSSTVATIFTGLASAAFLGHTLTINFLLGISVVFISMHQFFSPLAKAKDDKPAE 362
Query: 360 KIEMGDAHEHRSKESVVVNVSDSIATEAKHRHGTDERQPLLP 401
+E+ D HRS ES VN++ A +A HR GTDERQPLLP
Sbjct: 363 LLELEDTQNHRSSESSFVNMTAGAAEDASHRIGTDERQPLLP 404
>Os04g0490600 Nucleotide-sugar transporter family protein
Length = 293
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/278 (69%), Positives = 226/278 (81%), Gaps = 1/278 (0%)
Query: 2 SGEVECRVCHAKVQVPMAAAAVSKAYDIHRSSVSSRQRALNVLLVSGDCVLAGLQPILVY 61
+G +EC VCH+KV P + +VS+AYD HRS +SS+ RALN LLVSGDC+L GLQPILV+
Sbjct: 4 NGVMECSVCHSKVVAP-SPRSVSRAYDKHRSKISSKYRALNFLLVSGDCILVGLQPILVF 62
Query: 62 MCKVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVSTFMQAARNNVL 121
M KVDGKF+FSP+SVNFLTE+TK+IFAI+ML IQ+R+ KVGEKP L++STF+QAARNN L
Sbjct: 63 MSKVDGKFQFSPISVNFLTEVTKVIFAIVMLIIQSRKQKVGEKPLLSLSTFVQAARNNAL 122
Query: 122 LAVPALFYAINNYMKFVMQLYFNPATVKMLGNXXXXXXXXXXXXXMRRRFSTIQWEALAL 181
LAVPAL YAINNY+KF+MQLYF+PATVKML N MRR+FS IQWEALAL
Sbjct: 123 LAVPALLYAINNYLKFIMQLYFSPATVKMLSNLKVLVIAILLKFIMRRKFSIIQWEALAL 182
Query: 182 LLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKALKSQFDTSIYL 241
LLIGISVNQL S+P+G+ + GL V AY+YTL FVTVP+LASVYNE ALKSQFDTSIYL
Sbjct: 183 LLIGISVNQLSSIPDGTKSFGLAVTTIAYIYTLIFVTVPSLASVYNEYALKSQFDTSIYL 242
Query: 242 QNLFLYGYGAIFNFLGLVITAIIQGPSSFNILEGHSKA 279
QNLFLYGYGAIFNFLG++ T I QGP F+ + KA
Sbjct: 243 QNLFLYGYGAIFNFLGILGTVIFQGPQCFSFVTMLHKA 280
>Os06g0523400 Nucleotide-sugar transporter family protein
Length = 322
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 150/302 (49%), Gaps = 15/302 (4%)
Query: 51 VLAGLQPILVYMCKVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVS 110
VL Q IL + + +GK+K+ ++ FL E+ K+ F+ L + + P +T
Sbjct: 12 VLTSSQGILTTLSQSNGKYKYDYATIPFLAELFKLSFSSFFLW---KECQSSSPPRMT-- 66
Query: 111 TFMQAARNNVLLAVPALFYAINNYMKFVMQLYFNPATVKMLGNXXXXXXXXXXXXXMRRR 170
+ R+ L VP++ Y I+N ++F Y +P+T +++GN ++R+
Sbjct: 67 ---KEWRSIRLYLVPSVIYLIHNNVQFATLTYVDPSTYQIMGNLKIVTTGILFRLVLKRK 123
Query: 171 FSTIQWEALALLLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKA 230
S +QW A+ LL +G + +Q+K + Y+ + + ALA VY E
Sbjct: 124 LSNLQWMAVVLLAVGTTTSQVKGCGDAPCDSLFSAPFQGYMLGILSACLSALAGVYTEYL 183
Query: 231 LKSQFDTSIYLQNLFLYGYGAIFNFLGLVI-----TAIIQGPSSFNILEGHSKATMFLIC 285
+K D S+Y QN+ LY +G IFN +G +I +GP + G+S T ++
Sbjct: 184 MKKNND-SLYWQNVQLYTFGVIFN-MGWLIYGDFKAGFERGPWWQRLFNGYSITTWMVVF 241
Query: 286 NNAAQGILSSFFFKYADTILKKYSSTIATIFTGVASAVLFGHTLTINFVLAISIVIISMH 345
N + G+L S+ KY+D I+K YS+++A + T V S LF T+ L I I IIS+
Sbjct: 242 NLGSTGLLVSWLMKYSDNIVKVYSTSMAMLLTMVLSVYLFNVRATLQLFLGIVICIISLQ 301
Query: 346 QY 347
Y
Sbjct: 302 MY 303
>Os07g0573700 Nucleotide-sugar transporter family protein
Length = 356
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 141/295 (47%), Gaps = 10/295 (3%)
Query: 51 VLAGLQPILVYMCKVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVS 110
+L Q IL+ K GK+++S + NF E K + ++I L V E L+ S
Sbjct: 61 LLTSSQAILIVWSKRAGKYEYSVTTANFSVEALKCLLSLIALYRTWNSQGVTEDNRLSTS 120
Query: 111 TFMQAARNNVLLAVPALFYAINNYMKFVMQLYFNPATVKMLGNXXXXXXXXXXXXXMRRR 170
F + + + +PA+ Y + N +++ + Y + ++L N ++++
Sbjct: 121 -FDEVS----VYPIPAILYMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYRIILKKK 175
Query: 171 FSTIQWEALALLLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKA 230
S IQW A LL G + QL P L P+ ++ + + A VY E
Sbjct: 176 LSEIQWAAFILLCAGCTTAQLN--PSSDHVLQTPIQG--WVMAIVMALLSGFAGVYTEAI 231
Query: 231 LKSQFDTSIYLQNLFLYGYGAIFNFLGLVITAIIQGPSSFNILEGHSKATMFLICNNAAQ 290
+K + +I +QN +LY +G +FN + + + + G+S T+ +I N+A
Sbjct: 232 IKKRPSRNINVQNFWLYIFGMLFNLVAICVQDF-DAVMNKGFFHGYSFITVLMILNHALS 290
Query: 291 GILSSFFFKYADTILKKYSSTIATIFTGVASAVLFGHTLTINFVLAISIVIISMH 345
GI S KYAD I+K YS+++A + T V S LFG L++ F L ++V +S++
Sbjct: 291 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSTVVSVSVY 345
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,104,115
Number of extensions: 381994
Number of successful extensions: 1032
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1023
Number of HSP's successfully gapped: 5
Length of query: 402
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 299
Effective length of database: 11,657,759
Effective search space: 3485669941
Effective search space used: 3485669941
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)