BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0898800 Os01g0898800|J100053O19
         (181 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0898800  Protein of unknown function DUF1685 family pro...   310   4e-85
AK106757                                                          163   7e-41
Os11g0282300  Protein of unknown function DUF1685 family pro...   115   2e-26
Os12g0230600  Protein of unknown function DUF1685 family pro...    98   4e-21

>Os01g0898800 Protein of unknown function DUF1685 family protein
          Length = 181

 Score =  310 bits (793), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 155/181 (85%), Positives = 155/181 (85%)

Query: 1   MAAISTTTAAYFSSQPQLPATAAAKXXXXXXXXXXXXFVMLEXXXXXXXXXXXXXXVGRT 60
           MAAISTTTAAYFSSQPQLPATAAAK            FVMLE              VGRT
Sbjct: 1   MAAISTTTAAYFSSQPQLPATAAAKSGGRQQQRRRSSFVMLEAAAASGSGGGGGGAVGRT 60

Query: 61  RSLTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRFLDEQRAPGQEPESP 120
           RSLTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRFLDEQRAPGQEPESP
Sbjct: 61  RSLTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRFLDEQRAPGQEPESP 120

Query: 121 ATPPLPNWRISGPGKAFPSPRADFDSDNVLGLGLCEYILDYFLVVKVCDRFFLLFCWSCM 180
           ATPPLPNWRISGPGKAFPSPRADFDSDNVLGLGLCEYILDYFLVVKVCDRFFLLFCWSCM
Sbjct: 121 ATPPLPNWRISGPGKAFPSPRADFDSDNVLGLGLCEYILDYFLVVKVCDRFFLLFCWSCM 180

Query: 181 I 181
           I
Sbjct: 181 I 181



>AK106757 
          Length = 149

 Score =  163 bits (412), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 57  VGRTRSLTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRFLDEQRAPGQE 116
           VGRTRSLTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRFLDEQRAPGQE
Sbjct: 47  VGRTRSLTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRFLDEQRAPGQE 106

Query: 117 PESPATPPLPNWRISGPG 134
           PESPATPPLPNWRISGPG
Sbjct: 107 PESPATPPLPNWRISGPG 124



>Os11g0282300 Protein of unknown function DUF1685 family protein
          Length = 126

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 70/85 (82%), Gaps = 5/85 (5%)

Query: 57  VGRTRSLTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRFLDEQ-RAPGQ 115
           VGR RSLT++DLEELKGC+DLGFGF+Y EIPELCGTLPALELCYSM++RFLDE   +P  
Sbjct: 19  VGRARSLTDDDLEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLDEHYHSPVA 78

Query: 116 EPE--SPATP--PLPNWRISGPGKA 136
           EP   +P++P  P+ NW+IS PG +
Sbjct: 79  EPAPVAPSSPAQPIANWKISSPGDS 103



>Os12g0230600 Protein of unknown function DUF1685 family protein
          Length = 215

 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 64/82 (78%), Gaps = 4/82 (4%)

Query: 59  RTRSLTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRFLDE----QRAPG 114
           R RSLT++DLEELKGC+DLGFGF+Y EIPELCGTLPALELCYSM++RFLD+      +P 
Sbjct: 111 RARSLTDDDLEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLDDHPQSHHSPP 170

Query: 115 QEPESPATPPLPNWRISGPGKA 136
             P    +P +PNW+IS PG +
Sbjct: 171 PPPPPMPSPSIPNWKISSPGDS 192



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,091,519
Number of extensions: 266630
Number of successful extensions: 1036
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1035
Number of HSP's successfully gapped: 4
Length of query: 181
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 86
Effective length of database: 12,075,471
Effective search space: 1038490506
Effective search space used: 1038490506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)