Os01g0898800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1685 family protein.
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Os01g0898800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1685 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.33 | 0.57 | 12.5 | 1.52 | 5.32 | -2.94 | 0.288 | 0.885 | 0.896 | 5.23 | 16.07 | 261 | 19 | 7 |
| 146.95 | 0.565 | 12.5 | 1.54 | 5.29 | -2.9 | 0.684 | -- | 0.898 | 5.26 | 16.84 | 254 | 19 | 6.98 |
| 145.76 | 0.562 | 12.5 | 1.56 | 5.21 | -2.86 | -- | 1.57 | 0.945 | 5.31 | 17.15 | 249 | 19 | 7.02 |
| 145.82 | 0.562 | 12.5 | 1.49 | 5.14 | -2.89 | -- | -- | 0.93 | 5.35 | 17.76 | 258 | 18.9 | 6.78 |
| 1011.51 | 1.49 | 12.6 | 1.78 | -- | -4.28 | -- | 0.89 | 0.822 | -- | 16.8 | 6 | 17.5 | 7.5 |
| 249.42 | 0.74 | 12.5 | 1.26 | 5.01 | -- | 0.463 | -- | 0.725 | 6.45 | -- | -- | -- | -- |
| 249.95 | 0.74 | 12.5 | 1.27 | 5.01 | -- | -- | -- | 0.723 | 6.45 | -- | -- | -- | -- |
| 273.12 | 0.77 | 12.6 | 1.93 | -- | -5.87 | -- | -- | 0.351 | -- | 2.611 | 512 | 7.85 | 12.6 |
| 201.61 | 0.661 | 12.5 | -- | 5.15 | -2.66 | -- | -- | 0.786 | 5.3 | 16.91 | 212 | 19.1 | 6.93 |
| 1553.35 | 1.84 | 12.6 | 1.39 | -- | -- | -- | -- | 0.828 | -- | -- | -- | -- | -- |
| 292.3 | 0.8 | 12.5 | -- | 5.02 | -- | -- | -- | 0.582 | 6.44 | -- | -- | -- | -- |
| 259.69 | 0.751 | 12.6 | -- | -- | -5.37 | -- | -- | 0.664 | -- | -4.958 | 399 | 8.38 | 14.1 |
| 1604.67 | 1.87 | 12.6 | -- | -- | -- | -- | -- | 0.673 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 8 | 158.95 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 7 |
| 35 | 166.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 121 | 178.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 130 | 179.13 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 20 |
| 144 | 180.47 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 14 |
| 147 | 180.61 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 21 |
| 293 | 187.64 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 17 | 14 |
| 350 | 189.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 391 | 190.63 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 402 | 190.88 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 431 | 191.71 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 6 |
| 491 | 192.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 554 | 194.31 | temperature | 25 | 270 | < th | dose dependent | sin | 16 | NA |
| 567 | 194.54 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 15 |
| 671 | 196.30 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 9 |
| 680 | 196.45 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 5 |
| 689 | 196.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 710 | 196.87 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 19 | 6 |
| 748 | 197.50 | temperature | 10 | 30 | > th | dose dependent | rect. | 20 | 21 |
| 764 | 197.67 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 781 | 197.86 | radiation | 10 | 90 | < th | dose independent | rect. | 3 | 17 |
| 804 | 198.13 | radiation | 20 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 825 | 198.50 | radiation | 20 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 875 | 199.00 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 884 | 199.12 | radiation | 20 | 10 | < th | dose dependent | rect. | 17 | 16 |
| 898 | 199.26 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 13 |
| 929 | 199.66 | radiation | 20 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 947 | 199.97 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 13 |
| 960 | 200.13 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 966 | 200.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 999 | 200.47 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 20 | 7 |