BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0898800 Os01g0898800|J100053O19
(181 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G31560.1 | chr2:13436611-13437312 FORWARD LENGTH=203 106 6e-24
AT1G05870.1 | chr1:1772454-1773228 REVERSE LENGTH=190 105 2e-23
AT2G43340.1 | chr2:18007769-18008416 FORWARD LENGTH=190 100 5e-22
AT3G22690.1 | chr3:8021347-8024534 REVERSE LENGTH=939 85 3e-17
AT4G33985.1 | chr4:16288301-16288857 REVERSE LENGTH=155 52 1e-07
AT5G28690.1 | chr5:10723033-10723702 FORWARD LENGTH=193 52 1e-07
AT3G04700.1 | chr3:1276948-1277607 FORWARD LENGTH=192 52 2e-07
AT3G50350.1 | chr3:18672906-18673706 FORWARD LENGTH=182 52 2e-07
AT1G08790.1 | chr1:2811989-2812646 FORWARD LENGTH=191 51 4e-07
AT2G15590.2 | chr2:6801950-6802506 FORWARD LENGTH=156 50 9e-07
>AT2G31560.1 | chr2:13436611-13437312 FORWARD LENGTH=203
Length = 202
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 65/84 (77%), Gaps = 8/84 (9%)
Query: 59 RTRSLTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRFLDEQ-----RAP 113
R +SLT++DLEELKGCLDLGFGF+Y EIPELC TLPALELCYSM+++FLD++ ++
Sbjct: 94 RAKSLTDDDLEELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDKQQNHHKSQ 153
Query: 114 GQEPESP---ATPPLPNWRISGPG 134
++ SP T P+ NW+IS PG
Sbjct: 154 EEDDSSPPPTTTAPIANWKISSPG 177
>AT1G05870.1 | chr1:1772454-1773228 REVERSE LENGTH=190
Length = 189
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 65/85 (76%), Gaps = 9/85 (10%)
Query: 59 RTRSLTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRFLDEQRAPGQEPE 118
R++SLT++DLE+L+GCLDLGFGF+Y EIPELC TLPALELCYSM+++FLD+++ E
Sbjct: 80 RSKSLTDDDLEDLRGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDKQNKSPETS 139
Query: 119 S----PATP-----PLPNWRISGPG 134
S P+ P P+ NW+IS PG
Sbjct: 140 SVEDCPSPPLVTATPIANWKISSPG 164
>AT2G43340.1 | chr2:18007769-18008416 FORWARD LENGTH=190
Length = 189
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 10/85 (11%)
Query: 59 RTRSLTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRFLDEQRAPGQEP- 117
RT+SLT++DLEELKGC+DLGFGF Y EIPELC TLPALELCYSM+++F+D+
Sbjct: 81 RTKSLTDDDLEELKGCVDLGFGFNYEEIPELCNTLPALELCYSMSQKFIDQDHHHHSSSS 140
Query: 118 --------ESPATPPLPNWRISGPG 134
+SP + P+ +W+IS PG
Sbjct: 141 PEKKSSVLDSPVS-PIASWKISSPG 164
>AT3G22690.1 | chr3:8021347-8024534 REVERSE LENGTH=939
Length = 938
Score = 84.7 bits (208), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/51 (70%), Positives = 43/51 (84%)
Query: 63 LTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRFLDEQRAP 113
LT++DLE LKGCLDLGFGF Y EIP LC TLPALELCYSM+++ LD++ P
Sbjct: 843 LTDDDLEVLKGCLDLGFGFNYDEIPALCKTLPALELCYSMSQKNLDDKHTP 893
>AT4G33985.1 | chr4:16288301-16288857 REVERSE LENGTH=155
Length = 154
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 3/53 (5%)
Query: 57 VGRTRSLTEEDLEELKGCLDLGFGFAYHE---IPELCGTLPALELCYSMTRRF 106
+GR++S+T+EDLEELKGC++LGFGF P L TLPAL L ++ +++
Sbjct: 43 LGRSKSVTDEDLEELKGCIELGFGFEPDSPDLDPRLSETLPALGLYCAVNKQY 95
>AT5G28690.1 | chr5:10723033-10723702 FORWARD LENGTH=193
Length = 192
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 63 LTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRR 105
LT+EDL ELKG ++LGFGF+ +LC TLPAL+L +++ R+
Sbjct: 81 LTDEDLRELKGSIELGFGFSEEAGQKLCNTLPALDLYFAVNRQ 123
>AT3G04700.1 | chr3:1276948-1277607 FORWARD LENGTH=192
Length = 191
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 62 SLTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRF 106
+LT+EDL ELKG ++LGFGF +LC TLPAL+L +++ R+
Sbjct: 81 NLTDEDLNELKGSIELGFGFNEEAGQKLCNTLPALDLYFAVNRQL 125
>AT3G50350.1 | chr3:18672906-18673706 FORWARD LENGTH=182
Length = 181
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 59 RTRSLTEEDLEELKGCLDLGFGFAYHEI--PELCGTLPALELCYSMTRRFLD 108
R +SLT+EDL+ELK +LGFGF E P L TLPALEL +++ + + D
Sbjct: 69 RGKSLTDEDLDELKASFELGFGFGSPENADPRLSNTLPALELYFAVQKSYND 120
>AT1G08790.1 | chr1:2811989-2812646 FORWARD LENGTH=191
Length = 190
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 63 LTEEDLEELKGCLDLGFGFAYHEIPELCGTLPALELCYSMTRRF 106
LT+EDL ELKG ++LGFGF + L TLPAL+L +++TR+
Sbjct: 78 LTDEDLSELKGSIELGFGFNEEQGQHLTTTLPALDLYFAVTRQI 121
>AT2G15590.2 | chr2:6801950-6802506 FORWARD LENGTH=156
Length = 155
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 59 RTRSLTEEDLEELKGCLDLGFGFAYHE---IPELCGTLPALELCYSMTRRF 106
R++S+T +D+EELKGC +LGFGF P L T+PAL+L ++ R++
Sbjct: 42 RSKSVTNDDIEELKGCFELGFGFETESPDLNPRLSHTIPALDLYCAVHRQY 92
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.140 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,731,129
Number of extensions: 157553
Number of successful extensions: 463
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 10
Length of query: 181
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 89
Effective length of database: 8,584,297
Effective search space: 764002433
Effective search space used: 764002433
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)