BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0871800 Os01g0871800|AK067087
(112 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0871800 TGF-beta receptor, type I/II extracellular reg... 112 6e-26
Os01g0872100 TGF-beta receptor, type I/II extracellular reg... 74 2e-14
Os01g0872000 TGF-beta receptor, type I/II extracellular reg... 74 3e-14
>Os01g0871800 TGF-beta receptor, type I/II extracellular region family protein
Length = 112
Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 64/112 (57%)
Query: 1 MESGLLAHSDEPCDAGSKPXXXXXXXXXXXXXXXFLIAVGFLERVGFNGVQSNLVMYLXX 60
MESGLLAHSDEPCDAGSKP FLIAVGFLERVGFNGVQSNLVMYL
Sbjct: 1 MESGLLAHSDEPCDAGSKPDADADGRRGGWRAARFLIAVGFLERVGFNGVQSNLVMYLAG 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSRLGRYRAIVAAGVLHLLVS 112
DSRLGRYRAIVAAGVLHLLVS
Sbjct: 61 PMGMSTAAAAAGANAWAGTVLVLTLVGALAADSRLGRYRAIVAAGVLHLLVS 112
>Os01g0872100 TGF-beta receptor, type I/II extracellular region family protein
Length = 541
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 1 MESGLLAHSDEPCDAGSKPXXXXXXXXXXXXXXXFLIAVGFLERVGFNGVQSNLVMYLXX 60
MESG + E C P FLIAVGFLER+GFNGVQ NLVMYL
Sbjct: 1 MESGGILPPSETCAGSGSPDGRGGWRAAR-----FLIAVGFLERIGFNGVQGNLVMYLSG 55
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSRLGRYRAIVAAGVLHLL 110
DSRLGRYRAIVAAGVLHLL
Sbjct: 56 PMGMSTAAAAAGANAWGGTVLVLTLVGALAADSRLGRYRAIVAAGVLHLL 105
>Os01g0872000 TGF-beta receptor, type I/II extracellular region family protein
Length = 537
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 1 MESGLLAHSDEPCDAGSKPXXXXXXXXXXXXXXXFLIAVGFLERVGFNGVQSNLVMYLXX 60
MESG L E C + + FLIAVGFLER+GFNGVQ NLVMYL
Sbjct: 1 MESGGLIAPSETCSSDGR-----GGGGGGWRAARFLIAVGFLERIGFNGVQGNLVMYLTG 55
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSRLGRYRAIVAAGVLHLL 110
DSRLGRYRAIVAAGVLHLL
Sbjct: 56 PMGMSTAAAAAGANAWGGTVLVLTLVGALAADSRLGRYRAIVAAGVLHLL 105
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.141 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,803,184
Number of extensions: 29333
Number of successful extensions: 75
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 3
Length of query: 112
Length of database: 17,035,801
Length adjustment: 79
Effective length of query: 33
Effective length of database: 12,910,895
Effective search space: 426059535
Effective search space used: 426059535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 149 (62.0 bits)