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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0872100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.5 (0.0459) R2 : 0.902
β1 : 1 (0.169) R2dD : 0.00706 R2D : -0.00501
β2 : 7.57 (0.124) R2dC : 0.902 R2C : 0.462
β3 : -6.02 (0.144) R2dE : 0.427 R2E : -0.0056
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.69 (0.0982) R2dN8 : 0.0144 R2N8 : 0.000489
σ : 0.86
deviance : 340.77
__
_____
C
peak time of C : 15.8
E
wheather : temperature
threshold : 11.55
memory length : 246
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.25
open length of G : 6.77

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
332.33 0.857 5.5 0.953 7.6 -6.2 1.41 1.02 0.695 15.7 11.4 256 5.07 6.97
332.62 0.849 5.5 0.945 7.52 -6.13 1.84 -- 0.696 15.8 11.45 250 5.12 6.85
335.64 0.853 5.49 0.979 7.52 -6.12 -- 1.81 0.705 15.8 11.93 245 5.13 6.89
340.77 0.86 5.5 1 7.57 -6.02 -- -- 0.69 15.8 11.55 246 5.25 6.77
1360.13 1.72 5.49 2.27 -- -5.83 -- 2.22 0.965 -- 3.54 103 0.0139 11.4
745.99 1.28 5.62 0.619 7.25 -- 1.35 -- 0.581 18 -- -- -- --
750.44 1.28 5.62 0.608 7.26 -- -- -- 0.586 18 -- -- -- --
1311.59 1.69 5.56 1.37 -- -6.12 -- -- 0.83 -- 5.773 123 0.0142 11.3
362.6 0.887 5.52 -- 7.5 -5.85 -- -- 0.586 15.8 10.7 239 5.31 6.68
3479.16 2.76 5.5 0.394 -- -- -- -- 0.42 -- -- -- -- --
760.17 1.29 5.64 -- 7.25 -- -- -- 0.518 18 -- -- -- --
1315.54 1.69 5.45 -- -- -6.14 -- -- 0.675 -- 5.14 109 0.015 11.4
3483.25 2.75 5.51 -- -- -- -- -- 0.376 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 336.28 temperature 10.0 270 > th dose dependent rect. 5 7
2 341.38 temperature 10.0 90 > th dose dependent rect. 20 16
5 348.38 temperature 15.0 270 > th dose dependent rect. 6 5
24 370.16 temperature 20.0 270 > th dose independent rect. 7 4
27 370.82 temperature 10.0 270 > th dose dependent rect. 18 17
28 372.36 temperature 15.0 270 > th dose independent rect. 7 15
42 381.61 temperature 15.0 270 > th dose independent rect. 18 17
43 381.67 temperature 15.0 10 > th dose dependent rect. 7 6
83 401.87 temperature 15.0 90 > th dose independent rect. 20 16
148 424.68 atmosphere 1010.0 90 < th dose independent rect. 20 16
150 424.96 atmosphere 1010.0 270 < th dose independent rect. 7 4
158 428.93 radiation 1.0 270 > th dose independent rect. 6 5
176 434.26 temperature 20.0 10 > th dose independent rect. 8 5
183 436.02 radiation 1.0 270 > th dose independent rect. 4 8
202 438.39 wind 7.0 270 < th dose independent rect. 5 7
229 440.58 humidity 90.0 90 < th dose independent rect. 7 6
238 442.23 wind 7.0 270 < th dose independent rect. 6 5
244 442.72 humidity 50.0 270 > th dose independent rect. 18 17
252 444.35 wind 7.0 270 < th dose independent rect. 18 17
256 445.19 atmosphere 1010.0 270 < th dose independent rect. 7 16
267 446.82 temperature 10.0 270 > th dose independent rect. 11 7
268 446.82 atmosphere 1015.0 270 < th dose independent rect. 11 7
274 447.28 atmosphere 995.0 270 > th dose independent rect. 18 17
276 447.54 atmosphere 1015.0 10 < th dose dependent rect. 20 17
278 447.75 precipitation 0.1 270 < th dose independent rect. 11 7
279 447.75 precipitation 0.1 270 < th dose dependent rect. 11 7
284 448.75 humidity 50.0 270 > th dose independent rect. 5 7
294 450.07 humidity 50.0 270 > th dose independent rect. 6 5
295 450.09 precipitation 0.1 270 < th dose independent rect. 18 17
296 450.09 precipitation 0.1 270 < th dose dependent rect. 18 17
300 451.02 temperature 15.0 10 > th dose independent rect. 20 17
301 451.21 wind 9.0 270 < th dose independent rect. 11 7
302 451.28 precipitation 0.1 270 < th dose independent rect. 6 5
303 451.28 precipitation 0.1 270 < th dose dependent rect. 6 5
308 451.68 wind 7.0 10 < th dose independent rect. 20 17
309 451.70 atmosphere 1015.0 270 < th dose dependent rect. 7 4
313 451.88 radiation 40.0 270 < th dose dependent rect. 22 9
320 452.68 precipitation 0.1 270 < th dose independent rect. 5 7
321 452.68 precipitation 0.1 270 < th dose dependent rect. 5 7
325 453.21 wind 7.0 270 < th dose independent rect. 22 9
328 453.93 atmosphere 995.0 270 > th dose independent rect. 6 5
330 453.93 temperature 10.0 270 > th dose independent rect. 11 19
333 454.15 wind 9.0 270 < th dose independent rect. 7 15
335 454.23 temperature 10.0 270 > th dose independent rect. 22 9
336 454.23 temperature 30.0 270 < th dose independent rect. 22 9
337 454.23 humidity 50.0 270 > th dose independent rect. 22 9
339 454.23 atmosphere 995.0 270 > th dose independent rect. 22 9
340 454.23 radiation 40.0 270 < th dose independent rect. 22 9
343 454.66 wind 7.0 90 < th dose independent rect. 20 16
352 455.40 atmosphere 995.0 270 > th dose independent rect. 5 7
354 455.40 temperature 10.0 270 > th dose independent rect. 12 17
359 456.36 wind 9.0 270 < th dose independent rect. 12 17
362 456.79 precipitation 0.1 270 < th dose independent rect. 22 9
363 456.79 precipitation 0.1 270 < th dose dependent rect. 22 9
365 457.06 temperature 15.0 270 > th dose independent rect. 16 9
378 457.84 wind 9.0 270 < th dose independent rect. 11 19
386 458.05 wind 1.0 270 > th dose independent rect. 6 5
390 458.25 precipitation 0.1 270 < th dose independent rect. 11 19
392 458.25 precipitation 0.1 270 < th dose dependent rect. 11 19
398 459.70 wind 1.0 270 > th dose independent rect. 11 7
406 460.71 humidity 90.0 10 < th dose independent rect. 8 5
408 460.84 precipitation 0.1 270 < th dose independent rect. 12 17
409 460.84 precipitation 0.1 270 < th dose dependent rect. 12 17
412 461.08 precipitation 0.1 270 < th dose independent rect. 7 15
413 461.08 precipitation 0.1 270 < th dose dependent rect. 7 15
431 463.19 temperature 10.0 90 > th dose dependent rect. 8 16
448 464.95 atmosphere 1015.0 10 < th dose dependent rect. 8 5
467 466.01 atmosphere 1015.0 90 < th dose dependent rect. 7 6
481 467.09 radiation 1.0 270 < th dose dependent sin 5 NA
483 467.13 radiation 1.0 270 < th dose independent sin 6 NA
509 468.96 radiation 1.0 270 > th dose independent sin 6 NA
515 469.67 humidity 50.0 10 > th dose independent rect. 20 17
555 471.52 temperature 10.0 10 > th dose dependent rect. 8 18
566 472.07 atmosphere 995.0 270 > th dose independent rect. 11 7
602 474.43 wind 1.0 270 > th dose independent rect. 5 7
611 474.80 precipitation 0.1 10 < th dose independent rect. 13 7
612 474.80 radiation 1.0 270 < th dose independent rect. 23 16
613 474.80 precipitation 0.1 10 < th dose dependent rect. 13 7
623 475.11 temperature 10.0 10 > th dose dependent rect. 8 16
647 476.15 temperature 10.0 10 > th dose independent rect. 13 7
649 476.15 atmosphere 1010.0 10 < th dose independent rect. 13 7
652 476.15 atmosphere 995.0 10 > th dose independent rect. 20 17
659 476.51 wind 1.0 270 > th dose independent rect. 7 15
681 476.86 wind 9.0 270 < th dose dependent rect. 7 4
688 477.22 radiation 20.0 270 < th dose independent rect. 16 9
706 478.32 wind 9.0 10 < th dose independent rect. 13 7
726 479.02 atmosphere 1010.0 270 < th dose independent rect. 17 7
770 479.99 radiation 40.0 270 < th dose dependent rect. 16 9
785 480.62 wind 7.0 10 < th dose independent rect. 8 5
800 481.16 precipitation 0.1 10 < th dose independent rect. 20 17
801 481.16 precipitation 0.1 10 < th dose dependent rect. 20 17
833 481.78 temperature 10.0 270 > th dose independent rect. 1 15
834 481.78 atmosphere 1015.0 270 < th dose independent rect. 1 15
857 482.78 atmosphere 995.0 270 > th dose independent rect. 11 19
862 483.04 wind 9.0 270 < th dose independent rect. 16 9
879 483.75 atmosphere 995.0 270 > th dose independent rect. 12 17
884 484.08 atmosphere 995.0 270 > th dose dependent rect. 23 7
905 485.01 temperature 10.0 1440 > th dose independent rect. 14 7
908 485.01 temperature 10.0 1440 > th dose independent rect. 21 17
911 485.01 atmosphere 995.0 1440 > th dose independent rect. 21 17
916 485.13 radiation 1.0 270 < th dose dependent rect. 23 17
922 485.50 wind 1.0 10 > th dose independent rect. 13 7