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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0871800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.11 (0.0379) R2 : 0.922
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.82 (0.131) R2dC : 0.146 R2C : 0.481
β3 : -4.37 (0.119) R2dE : 0.43 R2E : 0.772
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.476 (0.0796) R2dN8 : 0.00789 R2N8 : 0.00794
σ : 0.709
deviance : 231.94
__
_____
C
peak time of C : 20
E
wheather : temperature
threshold : 14.89
memory length : 207
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.1
open length of G : 17.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
222.13 0.7 5.11 0.0564 2.58 -4.6 1.51 -0.709 0.46 20.1 14.8 247 19 17.1
220.92 0.692 5.12 0.0106 2.76 -4.47 2.01 -- 0.443 20 14.72 223 19 17.2
223.7 0.697 5.12 0.101 2.75 -4.44 -- -1.5 0.483 20 15 219 19.1 17.2
231.94 0.709 5.12 0.014 2.82 -4.37 -- -- 0.481 19.9 14.89 207 19.1 17.2
378.89 0.907 4.92 1.32 -- -5.46 -- -1.95 0.907 -- 15.27 247 20.6 15.5
650.46 1.2 5.16 -0.0685 6.62 -- 1.72 -- 0.683 18.7 -- -- -- --
657.96 1.2 5.15 -0.0957 6.63 -- -- -- 0.688 18.7 -- -- -- --
307.45 0.817 5.03 0.0287 -- -6.17 -- -- 0.493 -- 14.73 283 20.2 15.5
231.94 0.709 5.11 -- 2.82 -4.37 -- -- 0.476 20 14.89 207 19.1 17.2
2953.56 2.54 5.02 -0.248 -- -- -- -- 0.557 -- -- -- -- --
658.2 1.2 5.15 -- 6.63 -- -- -- 0.699 18.7 -- -- -- --
307.11 0.816 5.04 -- -- -6.21 -- -- 0.449 -- 14.8 285 20.2 15.5
2955.18 2.54 5.01 -- -- -- -- -- 0.585 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 231.13 temperature 15.0 270 > th dose independent rect. 19 17
3 243.36 wind 9.0 270 < th dose independent rect. 19 17
5 244.57 temperature 15.0 270 > th dose independent rect. 8 15
6 246.21 temperature 10.0 270 > th dose independent rect. 12 7
8 246.21 atmosphere 1015.0 270 < th dose independent rect. 12 7
10 246.21 atmosphere 995.0 270 > th dose independent rect. 19 17
11 246.25 precipitation 0.1 270 < th dose independent rect. 12 7
12 246.25 precipitation 0.1 270 < th dose dependent rect. 12 7
13 246.62 wind 9.0 270 < th dose independent rect. 12 7
14 246.74 temperature 15.0 270 > th dose independent rect. 7 5
23 247.88 radiation 1.0 270 > th dose independent rect. 6 7
26 249.03 precipitation 0.1 270 < th dose independent rect. 18 18
27 249.03 precipitation 0.1 270 < th dose dependent rect. 18 18
30 250.92 radiation 1.0 270 > th dose independent rect. 7 5
32 252.58 wind 1.0 270 > th dose independent rect. 12 6
33 252.76 humidity 50.0 270 > th dose independent rect. 19 17
38 254.42 temperature 15.0 270 > th dose independent rect. 6 7
39 254.58 wind 7.0 270 < th dose independent rect. 7 5
40 254.98 temperature 10.0 270 > th dose dependent rect. 7 5
45 258.04 radiation 40.0 270 < th dose independent rect. 23 9
46 258.14 precipitation 0.1 270 < th dose independent rect. 7 5
47 258.14 precipitation 0.1 270 < th dose dependent rect. 7 5
49 258.73 wind 9.0 270 < th dose independent rect. 23 9
50 258.75 temperature 10.0 270 > th dose independent rect. 23 9
51 258.75 temperature 30.0 270 < th dose independent rect. 23 9
52 258.75 humidity 50.0 270 > th dose independent rect. 23 9
54 258.75 atmosphere 995.0 270 > th dose independent rect. 23 9
58 259.24 atmosphere 995.0 270 > th dose independent rect. 7 5
59 259.24 atmosphere 1015.0 270 < th dose independent rect. 7 5
60 259.24 temperature 10.0 270 > th dose independent rect. 12 19
61 259.58 wind 9.0 270 < th dose independent rect. 12 19
75 260.45 wind 9.0 270 < th dose independent rect. 6 7
77 261.50 precipitation 0.1 270 < th dose independent rect. 6 7
78 261.50 precipitation 0.1 270 < th dose dependent rect. 6 7
79 261.91 wind 1.0 270 > th dose independent rect. 7 5
80 261.91 wind 9.0 270 < th dose independent rect. 8 15
83 262.39 humidity 50.0 270 > th dose independent rect. 7 5
84 262.42 temperature 20.0 270 > th dose independent rect. 8 3
85 262.60 radiation 40.0 270 < th dose dependent rect. 23 9
87 262.63 atmosphere 995.0 270 > th dose independent rect. 6 7
88 262.63 atmosphere 1015.0 270 < th dose independent rect. 6 7
89 262.63 temperature 10.0 270 > th dose independent rect. 13 17
90 262.64 wind 9.0 270 < th dose independent rect. 13 17
92 264.21 precipitation 0.1 270 < th dose independent rect. 12 19
93 264.21 precipitation 0.1 270 < th dose dependent rect. 12 19
95 265.45 precipitation 0.1 270 < th dose independent rect. 23 9
96 265.45 precipitation 0.1 270 < th dose dependent rect. 23 9
129 269.47 radiation 1.0 270 > th dose independent rect. 12 18
148 270.20 atmosphere 1015.0 270 < th dose independent rect. 23 9
151 270.28 radiation 1.0 270 > th dose independent rect. 8 3
152 270.29 precipitation 0.1 270 < th dose independent rect. 13 17
153 270.29 precipitation 0.1 270 < th dose dependent rect. 13 17
158 270.83 atmosphere 995.0 270 > th dose independent rect. 12 6
163 272.19 humidity 50.0 270 > th dose independent rect. 6 7
182 273.71 radiation 1.0 270 > th dose independent rect. 12 7
199 274.44 wind 7.0 270 < th dose independent rect. 8 3
206 276.26 temperature 10.0 270 > th dose dependent rect. 8 3
210 276.69 radiation 30.0 270 < th dose dependent rect. 17 9
216 277.20 humidity 50.0 270 > th dose independent rect. 17 9
217 277.32 radiation 40.0 10 < th dose independent rect. 13 7
223 278.46 precipitation 0.1 270 < th dose independent rect. 8 15
224 278.46 precipitation 0.1 270 < th dose dependent rect. 8 15
229 279.06 wind 9.0 270 < th dose independent rect. 17 20
232 279.89 precipitation 0.1 270 < th dose independent rect. 8 3
233 279.89 precipitation 0.1 270 < th dose dependent rect. 8 3
236 280.34 temperature 10.0 270 > th dose independent rect. 17 9
237 280.34 radiation 20.0 270 < th dose independent rect. 17 9
240 280.34 temperature 10.0 270 > th dose independent rect. 2 15
241 280.34 atmosphere 1015.0 270 < th dose independent rect. 2 15
243 280.93 temperature 10.0 270 > th dose independent rect. 13 4
245 280.93 atmosphere 1010.0 270 < th dose independent rect. 13 4
249 280.99 humidity 50.0 270 > th dose independent rect. 8 3
251 281.05 atmosphere 995.0 270 > th dose independent rect. 8 3
252 281.05 atmosphere 1015.0 270 < th dose independent rect. 8 3
253 281.05 temperature 10.0 270 > th dose independent rect. 11 21
255 281.37 wind 9.0 270 < th dose independent rect. 13 4
257 281.91 humidity 90.0 270 < th dose independent rect. 12 6
268 282.39 wind 9.0 270 < th dose independent rect. 17 9
273 282.99 precipitation 0.1 270 < th dose independent rect. 13 4
274 282.99 precipitation 0.1 270 < th dose dependent rect. 13 4
279 283.63 wind 1.0 270 > th dose independent rect. 8 3
292 284.16 radiation 40.0 90 < th dose independent rect. 13 7
295 284.86 precipitation 0.1 270 < th dose independent rect. 17 20
296 284.86 precipitation 0.1 270 < th dose dependent rect. 17 20
297 285.14 wind 9.0 270 < th dose independent rect. 11 21
319 286.96 atmosphere 995.0 270 > th dose independent rect. 12 19
322 287.05 wind 1.0 270 > th dose independent rect. 13 4
337 288.03 wind 9.0 270 < th dose independent rect. 1 16
340 288.13 atmosphere 995.0 270 > th dose independent rect. 17 8
345 288.37 wind 1.0 270 > th dose independent rect. 18 18
364 289.89 humidity 50.0 270 > th dose dependent rect. 23 9
373 290.76 precipitation 0.1 270 < th dose independent rect. 11 21
374 290.76 precipitation 0.1 270 < th dose dependent rect. 11 21
383 291.00 temperature 10.0 270 > th dose dependent rect. 12 7
389 291.53 precipitation 0.1 270 < th dose independent rect. 2 15
390 291.53 precipitation 0.1 270 < th dose dependent rect. 2 15
418 294.22 precipitation 0.1 270 < th dose independent rect. 17 8
419 294.22 precipitation 0.1 270 < th dose dependent rect. 17 8
420 294.29 temperature 30.0 270 < th dose independent rect. 17 8
442 295.04 wind 1.0 270 > th dose independent rect. 8 15
457 295.84 wind 9.0 10 < th dose independent rect. 20 17
458 295.98 temperature 15.0 10 > th dose independent rect. 20 17
463 296.84 atmosphere 995.0 270 > th dose independent rect. 13 17
465 297.03 precipitation 0.1 10 < th dose independent rect. 13 7
466 297.03 precipitation 0.1 10 < th dose dependent rect. 13 7
472 297.48 atmosphere 1015.0 270 < th dose independent rect. 19 17
478 297.91 atmosphere 995.0 270 > th dose independent rect. 13 4
480 298.15 wind 1.0 10 > th dose independent rect. 13 7
506 299.48 temperature 10.0 10 > th dose independent rect. 13 7
508 299.48 atmosphere 1010.0 10 < th dose independent rect. 13 7
511 299.48 atmosphere 995.0 10 > th dose independent rect. 20 17
513 299.54 radiation 1.0 270 > th dose independent rect. 13 4
568 302.57 atmosphere 1015.0 270 < th dose independent rect. 12 19
582 303.25 atmosphere 995.0 270 > th dose independent rect. 1 16
585 303.31 wind 9.0 10 < th dose independent rect. 13 7
631 305.42 atmosphere 1015.0 270 < th dose independent rect. 7 16
635 305.56 wind 9.0 270 < th dose dependent rect. 7 5
644 305.85 temperature 10.0 1440 > th dose independent rect. 14 7
648 305.85 temperature 10.0 1440 > th dose independent rect. 21 17
651 305.85 atmosphere 995.0 1440 > th dose independent rect. 21 17
675 306.97 wind 9.0 270 < th dose dependent rect. 23 8
681 307.35 atmosphere 995.0 270 > th dose independent rect. 7 16
694 307.92 humidity 90.0 90 < th dose independent rect. 9 4
723 310.35 temperature 10.0 90 > th dose dependent rect. 20 17
751 311.94 radiation 40.0 90 < th dose independent rect. 13 20
753 312.18 humidity 50.0 270 > th dose independent rect. 7 16
780 314.44 wind 9.0 270 < th dose dependent rect. 8 3
793 314.74 wind 1.0 270 > th dose independent rect. 17 8
805 315.28 radiation 40.0 270 < th dose independent rect. 12 18
822 316.25 temperature 10.0 10 > th dose dependent rect. 14 6
828 316.81 temperature 10.0 10 > th dose dependent rect. 8 6
875 319.69 temperature 10.0 270 > th dose dependent rect. 12 19
962 323.41 radiation 1.0 270 < th dose dependent sin 16 NA
970 323.67 temperature 20.0 10 > th dose independent rect. 8 6
976 323.96 atmosphere 995.0 10 > th dose independent rect. 13 7