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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0872000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0181) R2 : 0.0147
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0991 (0.038) R2dN8 : 0.019 R2N8 : 0.0147
σ : 0.34
deviance : 53.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.95 0.332 2.83 -0.0544 0.00055 -0.274 0.371 1.01 0.0923 17.4 1.054 6 -- --
50.76 0.332 2.82 -0.0198 0.00301 -0.258 -0.479 -- 0.1 4.78 1 5 -- --
50.03 0.329 2.83 -0.036 0.0289 -0.337 -- 1.12 0.0917 12.2 0.9734 5 -- --
51.33 0.334 2.82 -0.00574 0.0387 -0.253 -- -- 0.1 10.1 0.9026 5 -- --
50.09 0.33 2.83 -0.0463 -- -0.33 -- 1.11 0.0949 -- 0.9553 5 -- --
52.27 0.339 2.82 0.0112 0.0701 -- -0.472 -- 0.0967 5.19 -- -- -- --
52.81 0.34 2.82 0.0116 0.07 -- -- -- 0.0991 6.15 -- -- -- --
51.4 0.334 2.82 -0.0129 -- -0.253 -- -- 0.103 -- 0.9231 5 -- --
51.33 0.334 2.81 -- 0.0364 -0.255 -- -- 0.105 10.6 0.901 5 -- --
53.06 0.34 2.82 0.0135 -- -- -- -- 0.101 -- -- -- -- --
52.81 0.34 2.82 -- 0.0702 -- -- -- 0.0978 6.14 -- -- -- --
51.41 0.334 2.82 -- -- -0.251 -- -- 0.105 -- 0.955 5 -- --
53.07 0.34 2.82 -- -- -- -- -- 0.0991 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.70 wind 1.0 10 < th dose independent sin 19 NA
2 46.96 wind 1.0 10 < th dose independent rect. 9 18
7 47.21 wind 1.0 10 > th dose independent sin 19 NA
10 47.54 temperature 25.0 270 > th dose independent rect. 1 1
13 47.81 temperature 25.0 90 > th dose independent rect. 1 4
18 48.06 temperature 25.0 270 > th dose dependent rect. 1 1
23 48.18 wind 1.0 30 < th dose independent rect. 2 1
26 48.23 wind 3.0 30 < th dose dependent rect. 2 1
27 48.23 temperature 20.0 30 > th dose dependent rect. 2 1
32 48.27 atmosphere 1005.0 30 > th dose dependent rect. 2 1
37 48.31 temperature 25.0 30 < th dose independent rect. 2 1
39 48.32 humidity 80.0 30 > th dose independent rect. 2 1
44 48.34 atmosphere 1000.0 30 > th dose independent rect. 2 1
45 48.34 humidity 50.0 30 > th dose dependent rect. 2 1
51 48.35 temperature 10.0 30 > th dose independent rect. 2 1
54 48.35 humidity 50.0 30 > th dose independent rect. 2 1
58 48.35 atmosphere 1010.0 30 < th dose independent rect. 2 1
60 48.35 radiation 1.0 30 < th dose independent rect. 2 1
65 48.35 precipitation 0.1 30 < th dose independent rect. 2 1
66 48.35 temperature 10.0 30 > th dose independent rect. 3 23
67 48.35 radiation 1.0 30 < th dose dependent rect. 2 1
72 48.35 precipitation 0.1 30 < th dose dependent rect. 2 1
80 48.47 atmosphere 1015.0 30 < th dose dependent rect. 2 1
88 48.59 wind 1.0 10 < th dose independent rect. 13 14
96 48.62 temperature 30.0 30 < th dose dependent rect. 2 1
98 48.62 wind 1.0 10 < th dose dependent rect. 9 13
105 48.66 wind 1.0 10 > th dose independent rect. 5 23
124 48.86 wind 1.0 10 < th dose independent rect. 9 13
139 48.99 wind 1.0 30 > th dose independent rect. 2 1
140 49.00 wind 1.0 30 < th dose independent rect. 24 3
143 49.03 wind 1.0 10 < th dose dependent rect. 9 6
194 49.11 wind 1.0 10 < th dose independent rect. 21 6
210 49.13 wind 1.0 10 < th dose dependent sin 20 NA
218 49.21 wind 1.0 10 < th dose independent rect. 9 6
244 49.27 wind 1.0 90 < th dose dependent rect. 9 18
291 49.49 wind 9.0 30 < th dose independent rect. 3 23
330 49.62 radiation 1.0 4320 < th dose dependent rect. 3 1
335 49.68 humidity 60.0 1440 > th dose independent rect. 6 3
373 49.72 wind 9.0 1440 < th dose independent rect. 3 1
374 49.72 temperature 10.0 1440 > th dose independent rect. 3 1
377 49.72 temperature 30.0 1440 < th dose independent rect. 3 1
381 49.72 humidity 50.0 1440 > th dose independent rect. 3 1
390 49.72 atmosphere 995.0 1440 > th dose independent rect. 3 1
391 49.72 radiation 1.0 1440 < th dose independent rect. 3 1
414 49.72 temperature 10.0 1440 > th dose independent rect. 4 23
435 49.76 wind 1.0 90 < th dose dependent rect. 12 15
451 49.82 humidity 60.0 1440 > th dose independent rect. 4 5
470 49.87 precipitation 0.1 720 > th dose independent rect. 15 1
471 49.87 humidity 60.0 1440 > th dose independent rect. 23 10
472 49.87 precipitation 0.1 720 > th dose dependent rect. 15 1
490 49.93 atmosphere 1005.0 30 > th dose dependent rect. 2 3
492 49.94 wind 3.0 10 < th dose dependent rect. 1 10
493 49.95 wind 1.0 10 < th dose independent rect. 24 10
498 49.96 temperature 25.0 10 > th dose independent rect. 4 1
501 49.96 atmosphere 1005.0 30 > th dose dependent rect. 4 1
508 49.97 temperature 25.0 90 > th dose dependent rect. 4 1
512 49.98 humidity 60.0 90 < th dose independent rect. 18 15
516 49.98 humidity 60.0 90 < th dose dependent rect. 18 15
518 49.99 wind 1.0 30 > th dose independent rect. 4 1
525 49.99 humidity 60.0 10 < th dose dependent rect. 16 18
539 50.00 humidity 60.0 10 < th dose independent rect. 16 18
541 50.00 atmosphere 995.0 30 > th dose independent rect. 3 23
548 50.01 humidity 60.0 4320 < th dose independent rect. 8 1
575 50.02 humidity 60.0 270 < th dose independent rect. 8 1
577 50.02 humidity 60.0 10 < th dose independent rect. 9 1
682 50.02 humidity 60.0 270 < th dose dependent rect. 8 1
684 50.02 humidity 60.0 10 < th dose dependent rect. 9 1
807 50.03 wind 1.0 10 < th dose dependent rect. 9 1
814 50.03 radiation 40.0 30 > th dose dependent rect. 9 2
855 50.05 humidity 90.0 10 < th dose independent rect. 4 1
874 50.06 wind 7.0 1440 < th dose independent rect. 5 1
876 50.06 wind 1.0 10 < th dose independent rect. 9 1
877 50.06 temperature 10.0 1440 > th dose independent rect. 5 1
880 50.06 temperature 30.0 1440 < th dose independent rect. 5 1
884 50.06 humidity 50.0 1440 > th dose independent rect. 5 1
893 50.06 atmosphere 995.0 1440 > th dose independent rect. 5 1
894 50.06 atmosphere 1015.0 1440 < th dose independent rect. 5 1
895 50.06 radiation 20.0 1440 < th dose independent rect. 5 1
907 50.06 temperature 10.0 1440 > th dose independent rect. 6 23
920 50.07 atmosphere 1005.0 30 > th dose independent rect. 4 1
977 50.08 precipitation 0.1 30 < th dose independent rect. 3 23
981 50.08 precipitation 0.1 30 < th dose dependent rect. 3 23
982 50.09 wind 3.0 30 < th dose independent rect. 4 1