BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0862300 Os01g0862300|AK120353
(399 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0862300 Similar to Sorting nexin 1 778 0.0
AK110309 97 2e-20
Os05g0346100 Phox-like domain containing protein 95 1e-19
Os01g0827200 Phox-like domain containing protein 77 2e-14
>Os01g0862300 Similar to Sorting nexin 1
Length = 399
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/381 (100%), Positives = 381/381 (100%)
Query: 19 GVPFLSISVTDPVKMGTGVQAYISYRVITKTNLPDFEGQEKIVIRRYSDFEWLHDRLAEK 78
GVPFLSISVTDPVKMGTGVQAYISYRVITKTNLPDFEGQEKIVIRRYSDFEWLHDRLAEK
Sbjct: 19 GVPFLSISVTDPVKMGTGVQAYISYRVITKTNLPDFEGQEKIVIRRYSDFEWLHDRLAEK 78
Query: 79 YKGIFIPPLPEKNAVEKFRFSKEFIELRRQALDLFVNRIASHPELKQSGDLKIFLQADEE 138
YKGIFIPPLPEKNAVEKFRFSKEFIELRRQALDLFVNRIASHPELKQSGDLKIFLQADEE
Sbjct: 79 YKGIFIPPLPEKNAVEKFRFSKEFIELRRQALDLFVNRIASHPELKQSGDLKIFLQADEE 138
Query: 139 KMDRERSYETGIFKKPSDFLQMFKDVQSKVSDVVLGKEKPVEESSPEYEKLKNYIFELEN 198
KMDRERSYETGIFKKPSDFLQMFKDVQSKVSDVVLGKEKPVEESSPEYEKLKNYIFELEN
Sbjct: 139 KMDRERSYETGIFKKPSDFLQMFKDVQSKVSDVVLGKEKPVEESSPEYEKLKNYIFELEN 198
Query: 199 HLAEAQKQAFRLVKRHRELGQSLADFGKAIKLLGACEGDSLEKVFSEVGSKSEMLSVKLQ 258
HLAEAQKQAFRLVKRHRELGQSLADFGKAIKLLGACEGDSLEKVFSEVGSKSEMLSVKLQ
Sbjct: 199 HLAEAQKQAFRLVKRHRELGQSLADFGKAIKLLGACEGDSLEKVFSEVGSKSEMLSVKLQ 258
Query: 259 READNLLFNFEEPLKDYVRAVQSIKATMVDRANAFRQHHDLFQQKEYKGVNLEKLKFVNP 318
READNLLFNFEEPLKDYVRAVQSIKATMVDRANAFRQHHDLFQQKEYKGVNLEKLKFVNP
Sbjct: 259 READNLLFNFEEPLKDYVRAVQSIKATMVDRANAFRQHHDLFQQKEYKGVNLEKLKFVNP 318
Query: 319 DKFSELEAEVRELTADSEEATKRFEHIVAVMNEELARFQEQKTADIGFAFHEFAKGQAKL 378
DKFSELEAEVRELTADSEEATKRFEHIVAVMNEELARFQEQKTADIGFAFHEFAKGQAKL
Sbjct: 319 DKFSELEAEVRELTADSEEATKRFEHIVAVMNEELARFQEQKTADIGFAFHEFAKGQAKL 378
Query: 379 AKDIADAWRGVLPKLEACSTS 399
AKDIADAWRGVLPKLEACSTS
Sbjct: 379 AKDIADAWRGVLPKLEACSTS 399
>AK110309
Length = 607
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 7/125 (5%)
Query: 19 GVPFLSISVTDPVK-MG-TGV-----QAYISYRVITKTNLPDFEGQEKIVIRRYSDFEWL 71
G P L I V +P+K MG +G+ +AYISY V T T+LP F V RR+ DF L
Sbjct: 167 GNPELRIVVQNPLKHMGPSGLVPGLEEAYISYEVTTVTSLPHFSSTRLAVRRRFRDFVSL 226
Query: 72 HDRLAEKYKGIFIPPLPEKNAVEKFRFSKEFIELRRQALDLFVNRIASHPELKQSGDLKI 131
+ L + G F+P PEKN VE R + EFIE RR AL+ ++NR+A+HP +S L++
Sbjct: 227 SNLLPKLLHGSFLPARPEKNLVESRRMTSEFIEERRAALERYLNRLAAHPAAARSEALRV 286
Query: 132 FLQAD 136
FL+A+
Sbjct: 287 FLEAE 291
>Os05g0346100 Phox-like domain containing protein
Length = 540
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 113/423 (26%), Positives = 183/423 (43%), Gaps = 64/423 (15%)
Query: 25 ISVTDPVK---------MGTGVQAYISYRVITKTNLPDFEGQEKIVIRRYSDFEWLHDRL 75
I+V+DP + YISY ++T D + V RR+ DF L DRL
Sbjct: 107 IAVSDPTPEAEPAATSLVPGSAPTYISY-LVTSARRGDH--RRHAVRRRFRDFVTLADRL 163
Query: 76 AEKYKGIFIPPLPEKNAVEKFRFSK-EFIELRRQALDLFVNRIASHPELKQSGDLKIFLQ 134
AE ++G F+PP P+KN VE + EF+ RR AL+ ++ R+A HP + S +L++FLQ
Sbjct: 164 AEAFRGHFVPPRPDKNTVESQVMQRDEFVAQRRAALERYLWRLAEHPAIGPSDELRVFLQ 223
Query: 135 ADEEKMDRERSYET------GIFKKP-----------------------SDFLQMFKDV- 164
A E KM + + G + P D L++FK++
Sbjct: 224 A-EGKMPLPSTTDVASRMLDGAARLPRQLLAGEEAVAAPQEVVQPAKGGRDLLRIFKELK 282
Query: 165 QSKVSDVVLGKEKPVEESSPEYEKLKNYIFELENHLAEAQKQAFRLVKRHRELGQSLADF 224
QS VSD G P+ E E+ K + + E L A +QA LVK +++G+++
Sbjct: 283 QSVVSDWG-GVRPPLVEEDKEFLDKKQKLQDWEQQLTSASQQAEALVKAQQDMGETMGAL 341
Query: 225 GKAIKLLGACEGDSL----EKVFSEVGSKSEMLSVKLQREADNL---LFNFEEPLKDYVR 277
G A L E + +++ + + +VK R +L + + L +++
Sbjct: 342 GLAFIKLTKFETEEAMYDSQRIRAADSKRIATAAVKASRACRDLNTQTVKYLDTLHEHLG 401
Query: 278 AVQSIKATMVDRANAFRQHHDLFQQKEYKGVNLEKL-----KFVNPDK--FSELEAEVRE 330
+ S+ DR++A L + +EKL K DK ++E E+RE
Sbjct: 402 IMLSVHTAFSDRSSALLTVQTLMSDLASLQLRIEKLEAAASKIFGGDKSRLRKVE-ELRE 460
Query: 331 LTADSEEAT----KRFEHIVAVMNEELARFQEQKTADIGFAFHEFAKGQAKLAKDIADAW 386
+E+A + +E I EL R +K D+ + QA A+ I + W
Sbjct: 461 TIRATEDAKCCALREYERIKENNRSELNRLDREKKEDMLEMIKGYVTSQAAYAEKIVEGW 520
Query: 387 RGV 389
V
Sbjct: 521 ETV 523
>Os01g0827200 Phox-like domain containing protein
Length = 504
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/422 (24%), Positives = 177/422 (41%), Gaps = 64/422 (15%)
Query: 22 FLSISVTDPVKMG----------TGVQAYISYRVITKTNLPDFEGQEKIVIRRYSDFEWL 71
F+ I+V++P K G +Y SY + T+ +G V RR+ D L
Sbjct: 81 FVQITVSEPKKHAEPAAGAAGVIPGSGSYFSYLITTRAA----DGGLFRVRRRFRDVVAL 136
Query: 72 HDRLAEKYKGIFIPPLPEKNAVEKFRFSK-EFIELRRQALDLFVNRIASHPELKQSGDLK 130
DRLA Y+G+F+P P+K+ VE + EF+ R AL ++ R+A+HP + +S +L
Sbjct: 137 ADRLAAAYRGLFVPARPDKSIVEGQVMQRHEFVNQRCAALQRYLGRLAAHPTIGRSAELH 196
Query: 131 IFLQ---------ADEEKMD--------RERSYETGIFKKPS-DFLQMFKDVQSKVSD-V 171
FL + + D KP D MFKD++ V++ +
Sbjct: 197 DFLTEPSGIPTSAGESPRSDPALSAAMSAAAVTAPTAPAKPGRDIFGMFKDLKQTVANGL 256
Query: 172 VLGKEKPV-EESSPEYEKLKNYIFELENHLAEAQKQAFRLVKRHRELGQSLADFGKA-IK 229
V + PV EE+ ++ K + E HL A +Q L+K + +L + G IK
Sbjct: 257 VAVRPPPVEEETDAKFVMHKAKLEYFEQHLTTASQQVEALLKAYDDLKATTGQLGMTFIK 316
Query: 230 LL------GACEGDSLEKVFSEVGSKSEMLSVKLQREADNLLFNFEEPLK---DYVRAVQ 280
L C +S K ++ + + + + + R L E L +Y+ +
Sbjct: 317 LAKFEKEQDTC--NSQRKRAVDMSNFANAV-INMSRSQTKLNAKIEIHLGTIYEYLETMT 373
Query: 281 SIKATMVDRANAFRQ----HHDLF---------QQKEYKGVNLEKLKFVNPDKFSELEAE 327
S++ DRANA + DLF + +G+ E+L++ K EL+
Sbjct: 374 SVRNAFTDRANALLRVQSLSGDLFLLHTQAAKLESVSSRGMGQERLRY---QKIEELKET 430
Query: 328 VRELTADSEEATKRFEHIVAVMNEELARFQEQKTADIGFAFHEFAKGQAKLAKDIADAWR 387
+R+ A + +E I E+ RF ++K + F + Q ++ I+ W
Sbjct: 431 IRKTEDAKGNARQEYELIKENNMNEIIRFNKEKRHGLVEMLKGFVRNQVSYSEHISSIWT 490
Query: 388 GV 389
V
Sbjct: 491 KV 492
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,342,320
Number of extensions: 440095
Number of successful extensions: 1675
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1672
Number of HSP's successfully gapped: 4
Length of query: 399
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 296
Effective length of database: 11,657,759
Effective search space: 3450696664
Effective search space used: 3450696664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)