Os01g0862300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sorting nexin 1.
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Os01g0862300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sorting nexin 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.74 | 0.265 | 10.7 | 0.677 | 0.711 | -0.351 | -0.244 | -0.546 | 0.0592 | 4.44 | 81.98 | 1510 | -- | -- |
| 32.18 | 0.264 | 10.7 | 0.724 | 0.717 | -0.372 | -0.246 | -- | 0.0733 | 4.46 | 81.99 | 1467 | -- | -- |
| 31.89 | 0.263 | 10.7 | 0.673 | 0.712 | -0.354 | -- | -0.547 | 0.0646 | 4.39 | 83 | 1495 | -- | -- |
| 32.27 | 0.265 | 10.7 | 0.737 | 0.75 | -0.429 | -- | -- | 0.0719 | 4.23 | 82 | 1325 | -- | -- |
| 40.97 | 0.298 | 10.7 | 0.723 | -- | -0.944 | -- | 0.597 | 0.116 | -- | 136.4 | 309 | -- | -- |
| 36.27 | 0.282 | 10.7 | 0.665 | 0.709 | -- | -0.318 | -- | 0.0818 | 4.46 | -- | -- | -- | -- |
| 36.53 | 0.283 | 10.7 | 0.668 | 0.706 | -- | -- | -- | 0.0834 | 4.39 | -- | -- | -- | -- |
| 41.42 | 0.3 | 10.7 | 0.7 | -- | -0.903 | -- | -- | 0.111 | -- | 168.5 | 303 | -- | -- |
| 45.8 | 0.315 | 10.7 | -- | 0.74 | -0.414 | -- | -- | 0.0367 | 4.02 | 94 | 2488 | -- | -- |
| 63.3 | 0.372 | 10.7 | 0.695 | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
| 48.28 | 0.325 | 10.7 | -- | 0.719 | -- | -- | -- | 0.0091 | 4.37 | -- | -- | -- | -- |
| 54.34 | 0.343 | 10.7 | -- | -- | -0.899 | -- | -- | 0.0336 | -- | 189.2 | 303 | -- | -- |
| 76.05 | 0.407 | 10.7 | -- | -- | -- | -- | -- | 0.025 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.31 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 2 | 29.31 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 8 |
| 3 | 29.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 4 | 29.54 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 6 | 29.65 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 12 | 29.71 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 14 | 29.75 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 18 | 29.86 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 21 | 29.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 22 | 29.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 23 | 29.92 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 27 | 29.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 30 | 29.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 31 | 29.97 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 33 | 29.98 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 36 | 29.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 37 | 29.99 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 12 | 10 |
| 40 | 30.00 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 44 | 30.02 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 46 | 30.02 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 49 | 30.04 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 65 | 30.08 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 76 | 30.11 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 93 | 30.15 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 100 | 30.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 104 | 30.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 8 |
| 105 | 30.17 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 141 | 30.24 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 146 | 30.25 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 5 |
| 176 | 30.30 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 185 | 30.31 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 189 | 30.32 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 216 | 30.35 | wind | 5.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 299 | 30.46 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 340 | 30.51 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 356 | 30.53 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 398 | 30.57 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 400 | 30.57 | wind | 3.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 413 | 30.58 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 421 | 30.59 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 2 |
| 448 | 30.61 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 460 | 30.63 | humidity | 90.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 464 | 30.63 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 475 | 30.64 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 499 | 30.66 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 504 | 30.66 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 21 | NA |
| 527 | 30.68 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 535 | 30.68 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 567 | 30.71 | humidity | 90.0 | 14400 | < th | dose independent | sin | 21 | NA |
| 568 | 30.71 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 601 | 30.72 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 10 | 8 |
| 620 | 30.74 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 13 |
| 649 | 30.75 | wind | 3.0 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 659 | 30.76 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 731 | 30.79 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 732 | 30.79 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 765 | 30.81 | wind | 3.0 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 776 | 30.82 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 805 | 30.83 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 8 |
| 821 | 30.84 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 836 | 30.84 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 13 | 4 |
| 852 | 30.85 | wind | 3.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 855 | 30.85 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 867 | 30.85 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 885 | 30.86 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 11 | 7 |
| 891 | 30.86 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 8 | 13 |
| 895 | 30.87 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 8 |
| 898 | 30.87 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 900 | 30.87 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 933 | 30.89 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 943 | 30.89 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 954 | 30.89 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 9 |
| 959 | 30.90 | wind | 3.0 | 43200 | < th | dose independent | sin | 7 | NA |