BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0862300 Os01g0862300|AK120353
(399 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06140.1 | chr5:1856212-1858752 REVERSE LENGTH=403 563 e-161
AT5G07120.1 | chr5:2207065-2209355 REVERSE LENGTH=573 149 2e-36
AT5G58440.1 | chr5:23624154-23626676 REVERSE LENGTH=588 137 1e-32
>AT5G06140.1 | chr5:1856212-1858752 REVERSE LENGTH=403
Length = 402
Score = 563 bits (1451), Expect = e-161, Method: Compositional matrix adjust.
Identities = 269/376 (71%), Positives = 316/376 (84%)
Query: 21 PFLSISVTDPVKMGTGVQAYISYRVITKTNLPDFEGQEKIVIRRYSDFEWLHDRLAEKYK 80
P+LS+SVTDPVK+G GVQAYISYRVITKTNLP+++G EKIVIRRYSDF WL DRL EKYK
Sbjct: 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNLPEYQGPEKIVIRRYSDFVWLRDRLFEKYK 83
Query: 81 GIFIPPLPEKNAVEKFRFSKEFIELRRQALDLFVNRIASHPELKQSGDLKIFLQADEEKM 140
GIFIPPLPEK+AVEKFRFS EFIE+RR ALD+FVNRIA HPEL+QS DL+ FLQADEE M
Sbjct: 84 GIFIPPLPEKSAVEKFRFSAEFIEMRRAALDIFVNRIALHPELQQSEDLRTFLQADEETM 143
Query: 141 DRERSYETGIFKKPSDFLQMFKDVQSKVSDVVLGKEKPVEESSPEYEKLKNYIFELENHL 200
DR R ET IFKKP+D +QMF+DVQSKVSD VLGKEKPVEE++ +YEKLK+YIFELENHL
Sbjct: 144 DRFRFQETSIFKKPADLMQMFRDVQSKVSDAVLGKEKPVEETTADYEKLKHYIFELENHL 203
Query: 201 AEAQKQAFRLVKRHRELGQSLADFGKAIKLLGACEGDSLEKVFSEVGSKSEMLSVKLQRE 260
EAQK A+RLVKRHRELGQSL DFGKA+KLLGACEG+ K FS++G+KSE+LS+KLQ+E
Sbjct: 204 TEAQKHAYRLVKRHRELGQSLLDFGKAVKLLGACEGEPTGKAFSDLGTKSELLSIKLQKE 263
Query: 261 ADNLLFNFEEPLKDYVRAVQSIKATMVDRANAFRQHHDLFQQKEYKGVNLEKLKFVNPDK 320
A +L NFEEPLKDYVR VQSIKAT+ +R AF+QH +L + + K +NL+KL DK
Sbjct: 264 AQQVLMNFEEPLKDYVRYVQSIKATIAERGTAFKQHCELSETTKLKEINLDKLMLTRSDK 323
Query: 321 FSELEAEVRELTADSEEATKRFEHIVAVMNEELARFQEQKTADIGFAFHEFAKGQAKLAK 380
E E E RE+ A+SEEAT+RFE IV M +E+ RFQEQKT ++G AFH+FAKGQA+LA
Sbjct: 324 VGEAEIEYREIKAESEEATRRFERIVKRMEDEIVRFQEQKTEEMGVAFHQFAKGQARLAN 383
Query: 381 DIADAWRGVLPKLEAC 396
+ADAWR +LPKLEA
Sbjct: 384 SVADAWRSLLPKLEAS 399
>AT5G07120.1 | chr5:2207065-2209355 REVERSE LENGTH=573
Length = 572
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 197/422 (46%), Gaps = 56/422 (13%)
Query: 22 FLSISVTDPVK-------MGTGVQAYISYRVITKTNLPDFEGQEKIVIRRYSDFEWLHDR 74
++ I+V++P K M G YI+Y++ T+TNL D+ G E V RR+ D L DR
Sbjct: 141 YIKITVSNPQKEQEATNSMIPGGSTYITYQITTRTNLSDYGGSEFSVRRRFRDIVTLADR 200
Query: 75 LAEKYKGIFIPPLPEKNAVEKFRFSK-EFIELRRQALDLFVNRIASHPELKQSGDLKIFL 133
LAE Y+G IPP P+K+ VE K EF+E RR AL+ ++ R+ +HP ++ S +LK+FL
Sbjct: 201 LAESYRGFCIPPRPDKSIVESQVMQKQEFVEQRRVALEKYLRRLVAHPVIRNSDELKVFL 260
Query: 134 QADEE-----KMDRERSYETGIFKKPS----------------------DFLQMFKDVQS 166
QA + D G K P DFL+MFK+++
Sbjct: 261 QAQGKLPLATSTDVASRMLDGAVKLPKQLFGEGGGASSVEVVQPGRGGRDFLRMFKELRQ 320
Query: 167 KVSDVVLGKEKPVEESSPEYEKLKNYIFELENHLAEAQKQAFRLVKRHRELGQSLADFGK 226
VS+ G + PV E E+ + K +++LE + A +QA LVK +++G+++ + G
Sbjct: 321 SVSNDWGGSKPPVVEEDKEFLEKKEKMYDLEQQIINASQQAESLVKAQQDMGETMGELGL 380
Query: 227 AIKLLGACEGDSLEKVFSEVGSK---------SEMLSVKLQREADNLLFNFEEPLKDYVR 277
A L E + E VF+ ++ S + + + RE ++ + L DY+
Sbjct: 381 AFIKLTKFENE--EAVFNSQRARANDMKNLATSAVKASRFYRELNSQTVKHLDTLHDYLG 438
Query: 278 AVQSIKATMVDRANAFRQHHDLFQQKEYKGVNLEKLKFVNPDKFSELEAEVREL------ 331
+ +++ DR++A L + EKL+ + F ++ ++++
Sbjct: 439 LMMAVQGAFADRSSALLTVQTLLSELSSLEARAEKLEVASSKVFGGDKSRIKKIEELKET 498
Query: 332 ---TADSEE-ATKRFEHIVAVMNEELARFQEQKTADIGFAFHEFAKGQAKLAKDIADAWR 387
T DS+ A + +E I E+ R ++ AD F Q A+ IA+ W
Sbjct: 499 IKVTEDSKNVAIREYEQIKENNWSEVERLDRERRADFLNMMKGFVANQVGYAEKIANVWT 558
Query: 388 GV 389
V
Sbjct: 559 KV 560
>AT5G58440.1 | chr5:23624154-23626676 REVERSE LENGTH=588
Length = 587
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 195/422 (46%), Gaps = 54/422 (12%)
Query: 22 FLSISVTDPVKMG------TGVQAYISYRVITKTNLPDFEGQEKIVIRR-YSDFEWLHDR 74
++ I+V++P K G YI+Y++ T+TNLPDF G + +RR + D L DR
Sbjct: 152 YIKITVSNPQKEQEISNSIVGGNTYITYQITTRTNLPDFGGPSEFSVRRRFRDVVTLADR 211
Query: 75 LAEKYKGIFIPPLPEKNAVEKFRFSK-EFIELRRQALDLFVNRIASHPELKQSGDLKIFL 133
LAE Y+G IPP P+K+ VE K EF+E RR AL+ ++ R+++HP ++ S +LK+FL
Sbjct: 212 LAETYRGFCIPPRPDKSVVESQVMQKQEFVEQRRVALEKYLRRLSAHPVIRNSDELKVFL 271
Query: 134 QADEE------------------KMDRERSYETGIFKKP-----------SDFLQMFKDV 164
Q + K+ ++ E G P D L++FK++
Sbjct: 272 QVQGKLPLPMSTDVASRMLDGAVKLPKQLFGEGGASAVPVTEVGQPARGGRDLLRLFKEL 331
Query: 165 QSKVSDVVLGKEKPVEESSPEYEKLKNYIFELENHLAEAQKQAFRLVKRHRELGQSLADF 224
+ VS+ G + PV E E+ + K + +LE + A +QA LVK +++G+++ +
Sbjct: 332 RQSVSNDWGGSKPPVVEEDKEFLEKKEKMHDLEQQIINASQQAESLVKAQQDMGETMGEL 391
Query: 225 GKA-IKLL------GACEGDSLEKVFSEVGSKSEMLSVKLQREADNLLFNFEEPLKDYVR 277
G A IKL C + + + + + + RE ++ + L +Y+
Sbjct: 392 GLAFIKLTKFENEEAVCNPQRTRANDMKNLATAAVKASRFYRELNSQTVKHLDTLHEYLG 451
Query: 278 AVQSIKATMVDRANAFRQHHDLFQQKEYKGVNLEKLKFVNPDKFSELEAEVREL------ 331
+ +++ DR++A L + +EKL+ + F ++ +R++
Sbjct: 452 MMMAVQGAFADRSSALLTVQTLLSELPSLQTRVEKLEAASSKVFGGDKSRIRKIEELKET 511
Query: 332 ---TADSEE-ATKRFEHIVAVMNEELARFQEQKTADIGFAFHEFAKGQAKLAKDIADAWR 387
T D++ A K +E I E+ R ++ AD F Q A+ + + W
Sbjct: 512 IKVTEDAKNVAIKGYERIKENNRSEVERLDRERRADFMNMMKGFVVNQVGYAEKMGNVWA 571
Query: 388 GV 389
V
Sbjct: 572 KV 573
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,780,262
Number of extensions: 325945
Number of successful extensions: 1358
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1354
Number of HSP's successfully gapped: 4
Length of query: 399
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 298
Effective length of database: 8,337,553
Effective search space: 2484590794
Effective search space used: 2484590794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)