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Os05g0346100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phox-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.76 (0.0171) R2 : 0.639
β1 : 1.67 (0.0662) R2dD : 0.609 R2D : 0.137
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.66 (0.0772) R2dE : 0.465 R2E : -0.0443
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.477 (0.0385) R2dN8 : 0.188 R2N8 : -0.119
σ : 0.313
deviance : 45.27
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 13.16
memory length : 1737
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.99 0.29 9.73 1.82 0.515 -2.15 0.172 1.58 0.546 14.2 15.56 95 -- --
39.42 0.292 9.75 1.57 0.565 -2.31 0.491 -- 0.489 13.5 12.58 19 -- --
38.06 0.287 9.72 1.84 0.522 -2.13 -- 1.73 0.55 14.1 15.98 94 -- --
40.35 0.296 9.75 1.58 0.557 -2.28 -- -- 0.489 13.4 12.68 19 -- --
44.87 0.312 9.73 1.87 -- -1.71 -- 1.84 0.509 -- 10.47 660 -- --
88.77 0.442 9.83 1.13 0.194 -- -0.49 -- 0.164 5.82 -- -- -- --
89.34 0.443 9.83 1.13 0.192 -- -- -- 0.166 6.11 -- -- -- --
45.27 0.313 9.76 1.67 -- -1.66 -- -- 0.477 -- 13.16 1737 -- --
99.17 0.466 9.81 -- 0.342 -1.52 -- -- 0.219 12.3 1.564 4 -- --
91.26 0.446 9.83 1.14 -- -- -- -- 0.17 -- -- -- -- --
123.11 0.519 9.85 -- 0.209 -- -- -- 0.0401 5.83 -- -- -- --
102.95 0.473 9.83 -- -- -0.945 -- -- 0.176 -- 19.42 334 -- --
125.39 0.523 9.86 -- -- -- -- -- 0.0443 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.63 temperature 30 270 < th dose dependent rect. 22 23
5 37.38 temperature 15 720 > th dose dependent rect. 15 20
10 38.01 temperature 30 270 < th dose dependent rect. 24 23
12 38.04 temperature 15 90 > th dose dependent no NA NA
18 38.19 temperature 30 90 < th dose dependent no NA NA
26 38.44 temperature 30 30 < th dose dependent rect. 9 23
36 38.56 temperature 30 30 < th dose dependent rect. 11 23
39 38.60 temperature 30 10 < th dose dependent rect. 13 23
41 38.61 temperature 10 720 > th dose dependent rect. 21 22
43 38.63 temperature 15 270 > th dose dependent rect. 4 23
52 38.74 temperature 30 30 < th dose dependent rect. 15 23
53 38.75 temperature 20 1440 > th dose dependent sin 15 NA
56 38.79 temperature 30 720 < th dose dependent rect. 17 20
60 38.81 temperature 20 1440 > th dose dependent rect. 15 11
71 38.86 temperature 20 1440 > th dose dependent rect. 14 15
78 38.90 temperature 20 1440 > th dose dependent rect. 11 18
128 39.09 temperature 30 270 < th dose dependent rect. 9 23
130 39.10 temperature 15 270 > th dose dependent rect. 6 23
131 39.11 temperature 20 1440 > th dose dependent rect. 17 5
217 39.39 temperature 30 90 < th dose dependent rect. 17 23
218 39.40 temperature 20 1440 > th dose dependent no NA NA
222 39.40 temperature 20 90 > th dose dependent rect. 23 23
243 39.44 temperature 20 1440 > th dose dependent rect. 3 23
255 39.47 temperature 20 1440 > th dose dependent rect. 1 23
279 39.54 temperature 30 1440 < th dose dependent rect. 17 4
291 39.56 temperature 30 30 < th dose dependent rect. 5 23
311 39.63 temperature 30 1440 < th dose dependent rect. 17 2
486 40.15 temperature 20 10 > th dose dependent rect. 23 23
718 40.46 temperature 30 10 < th dose dependent rect. 21 23
719 40.47 temperature 30 1440 < th dose dependent sin 16 NA