BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0346100 Os05g0346100|AK066689
         (540 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0346100  Phox-like domain containing protein                 811   0.0  
Os01g0827200  Phox-like domain containing protein                 336   2e-92
AK110309                                                          111   1e-24

>Os05g0346100 Phox-like domain containing protein
          Length = 540

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/435 (92%), Positives = 402/435 (92%)

Query: 106 LIAVSDPTPEAEPAATSLVPGSAPTYISYLVTSXXXXXXXXXXXXXXXXXXXTLADRLAE 165
           LIAVSDPTPEAEPAATSLVPGSAPTYISYLVTS                   TLADRLAE
Sbjct: 106 LIAVSDPTPEAEPAATSLVPGSAPTYISYLVTSARRGDHRRHAVRRRFRDFVTLADRLAE 165

Query: 166 AFRGHFVPPRPDKNTVESQVMQRDEFVAQRRAALERYLWRLAEHPAIGPSDELRVFLQAE 225
           AFRGHFVPPRPDKNTVESQVMQRDEFVAQRRAALERYLWRLAEHPAIGPSDELRVFLQAE
Sbjct: 166 AFRGHFVPPRPDKNTVESQVMQRDEFVAQRRAALERYLWRLAEHPAIGPSDELRVFLQAE 225

Query: 226 GKMPLPSTTDVASRMLDGAARLPRQLLAGXXXXXXXXXXXXXXKGGRDLLRIFKELKQSV 285
           GKMPLPSTTDVASRMLDGAARLPRQLLAG              KGGRDLLRIFKELKQSV
Sbjct: 226 GKMPLPSTTDVASRMLDGAARLPRQLLAGEEAVAAPQEVVQPAKGGRDLLRIFKELKQSV 285

Query: 286 VSDWGGVRPPLVEEDKEFLDKKQKLQDWEQQLTSASQQAEALVKAQQDMGETMGALGLAF 345
           VSDWGGVRPPLVEEDKEFLDKKQKLQDWEQQLTSASQQAEALVKAQQDMGETMGALGLAF
Sbjct: 286 VSDWGGVRPPLVEEDKEFLDKKQKLQDWEQQLTSASQQAEALVKAQQDMGETMGALGLAF 345

Query: 346 IKLTKFETEEAMYDSQRIRAADSKRIATAAVKASRACRDLNTQTVKYLDTLHEHLGIMLS 405
           IKLTKFETEEAMYDSQRIRAADSKRIATAAVKASRACRDLNTQTVKYLDTLHEHLGIMLS
Sbjct: 346 IKLTKFETEEAMYDSQRIRAADSKRIATAAVKASRACRDLNTQTVKYLDTLHEHLGIMLS 405

Query: 406 VHTAFSDRSSALLTVQTLMSDLASLQLRIEKLEAAASKIFGGDKSRLRKVEELRETIRAT 465
           VHTAFSDRSSALLTVQTLMSDLASLQLRIEKLEAAASKIFGGDKSRLRKVEELRETIRAT
Sbjct: 406 VHTAFSDRSSALLTVQTLMSDLASLQLRIEKLEAAASKIFGGDKSRLRKVEELRETIRAT 465

Query: 466 EDAKCCALREYERIKENNRSELNRLDREKKEDMLEMIKGYVTSQAAYAEKIVEGWETVAE 525
           EDAKCCALREYERIKENNRSELNRLDREKKEDMLEMIKGYVTSQAAYAEKIVEGWETVAE
Sbjct: 466 EDAKCCALREYERIKENNRSELNRLDREKKEDMLEMIKGYVTSQAAYAEKIVEGWETVAE 525

Query: 526 ETSGYARRSDNNIAW 540
           ETSGYARRSDNNIAW
Sbjct: 526 ETSGYARRSDNNIAW 540



>Os01g0827200 Phox-like domain containing protein
          Length = 504

 Score =  336 bits (862), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/430 (45%), Positives = 257/430 (59%), Gaps = 20/430 (4%)

Query: 107 IAVSDPTPEAEPAA--TSLVPGSAPTYISYLVTSXXXXXXXXXXXXXXXXXXXTLADRLA 164
           I VS+P   AEPAA    ++PGS  +Y SYL+T+                    LADRLA
Sbjct: 84  ITVSEPKKHAEPAAGAAGVIPGSG-SYFSYLITTRAADGGLFRVRRRFRDVV-ALADRLA 141

Query: 165 EAFRGHFVPPRPDKNTVESQVMQRDEFVAQRRAALERYLWRLAEHPAIGPSDELRVFLQA 224
            A+RG FVP RPDK+ VE QVMQR EFV QR AAL+RYL RLA HP IG S EL  FL  
Sbjct: 142 AAYRGLFVPARPDKSIVEGQVMQRHEFVNQRCAALQRYLGRLAAHPTIGRSAELHDFLTE 201

Query: 225 EGKMPLPSTTDVASRMLDGAARLPRQ--LLAGXXXXXXXXXXXXXXKGGRDLLRIFKELK 282
              +P              A   PR    L+               K GRD+  +FK+LK
Sbjct: 202 PSGIPT------------SAGESPRSDPALSAAMSAAAVTAPTAPAKPGRDIFGMFKDLK 249

Query: 283 QSVVSDWGGVRPPLVEE--DKEFLDKKQKLQDWEQQLTSASQQAEALVKAQQDMGETMGA 340
           Q+V +    VRPP VEE  D +F+  K KL+ +EQ LT+ASQQ EAL+KA  D+  T G 
Sbjct: 250 QTVANGLVAVRPPPVEEETDAKFVMHKAKLEYFEQHLTTASQQVEALLKAYDDLKATTGQ 309

Query: 341 LGLAFIKLTKFETEEAMYDSQRIRAADSKRIATAAVKASRACRDLNTQTVKYLDTLHEHL 400
           LG+ FIKL KFE E+   +SQR RA D    A A +  SR+   LN +   +L T++E+L
Sbjct: 310 LGMTFIKLAKFEKEQDTCNSQRKRAVDMSNFANAVINMSRSQTKLNAKIEIHLGTIYEYL 369

Query: 401 GIMLSVHTAFSDRSSALLTVQTLMSDLASLQLRIEKLEAAASKIFGGDKSRLRKVEELRE 460
             M SV  AF+DR++ALL VQ+L  DL  L  +  KLE+ +S+  G ++ R +K+EEL+E
Sbjct: 370 ETMTSVRNAFTDRANALLRVQSLSGDLFLLHTQAAKLESVSSRGMGQERLRYQKIEELKE 429

Query: 461 TIRATEDAKCCALREYERIKENNRSELNRLDREKKEDMLEMIKGYVTSQAAYAEKIVEGW 520
           TIR TEDAK  A +EYE IKENN +E+ R ++EK+  ++EM+KG+V +Q +Y+E I   W
Sbjct: 430 TIRKTEDAKGNARQEYELIKENNMNEIIRFNKEKRHGLVEMLKGFVRNQVSYSEHISSIW 489

Query: 521 ETVAEETSGY 530
             VAEET+GY
Sbjct: 490 TKVAEETTGY 499



>AK110309 
          Length = 607

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 171/408 (41%), Gaps = 21/408 (5%)

Query: 107 IAVSDPTPEAEPAATSLVPGSAPTYISY---LVTSXXXXXXXXXXXXXXXXXXXTLADRL 163
           I V +P     P  + LVPG    YISY    VTS                   +L++ L
Sbjct: 173 IVVQNPLKHMGP--SGLVPGLEEAYISYEVTTVTSLPHFSSTRLAVRRRFRDFVSLSNLL 230

Query: 164 AEAFRGHFVPPRPDKNTVESQVMQRDEFVAQRRAALERYLWRLAEHPAIGPSDELRVFLQ 223
            +   G F+P RP+KN VES+ M   EF+ +RRAALERYL RLA HPA   S+ LRVFL+
Sbjct: 231 PKLLHGSFLPARPEKNLVESRRMT-SEFIEERRAALERYLNRLAAHPAAARSEALRVFLE 289

Query: 224 AEGKM-PLPSTTDVASRML---DGAARLPRQLLAGXXXXXXXXXXXXXXKGGRDLLRIFK 279
           AEG +   P    +  ++L       RL R ++                   RD+ R+  
Sbjct: 290 AEGSLRSNPQWLALKPKVLTPIQATNRLLRTIVGARKTAPTPGEVVQPAAANRDIYRLLH 349

Query: 280 ELKQSVVSDWGGVRPPLVEEDKEFLDKKQKLQDWEQQLTSASQQAEALVKAQQDMGETMG 339
           E  Q +   +     PL  E+    D    ++D    L  A  +AEA  +A +     +G
Sbjct: 350 ENLQQLRGSFK--HSPLNAEEVALRDDTVVVEDEAAALHVALHRAEAWTRAAERRSALLG 407

Query: 340 ALGLAFIKLTKFETEEAMYDSQRIRAADSKRIATAAVKASRACRDLNTQTVKYLDTLHEH 399
              +A   L  FE        QR   A  +  A A      +       + K L  L ++
Sbjct: 408 EAAVALEALASFEGSYTY--CQRANTAAMEAAAQAMQACGASSSAAAAASSKLLQPLRDN 465

Query: 400 LGIMLSVHTAFSDRSSALLTVQTLMSDLASLQLRIEKLEAAASKIFGGDKSRLRKVEELR 459
                +V  A   R   LLTV TL  DL   + R+  ++   +       S+ +KV+ LR
Sbjct: 466 HAATPNVMAALHGRERQLLTVMTLRQDLEDKRARLSAVQLTPA-------SQAKKVDSLR 518

Query: 460 ETIRATEDAKCCALREYERIKENNRSELNRLDREKKEDMLEMIKGYVT 507
             +   E +   A  EY R    NR EL  L + + +++  M+   V+
Sbjct: 519 TVVGQLEVSSAAAEAEYNRQLARNRDELAALRQSRGQELTAMLGALVS 566



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,810,446
Number of extensions: 433233
Number of successful extensions: 1570
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1563
Number of HSP's successfully gapped: 3
Length of query: 540
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 434
Effective length of database: 11,501,117
Effective search space: 4991484778
Effective search space used: 4991484778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)