BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0858900 Os01g0858900|AK107493
(393 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0858900 Glycosyl transferase, family 29 protein 561 e-160
Os12g0151500 Similar to Alpha-2,8-sialyltransferase 8B (EC ... 296 2e-80
Os04g0506800 Glycosyl transferase, family 29 protein 294 7e-80
>Os01g0858900 Glycosyl transferase, family 29 protein
Length = 393
Score = 561 bits (1447), Expect = e-160, Method: Compositional matrix adjust.
Identities = 296/393 (75%), Positives = 296/393 (75%)
Query: 1 MKRPLRRPXXXXXXXXXXXXXXXPSVLRRSVGXXXXXXXXXXXXXXXXXXXXXXXXXXDP 60
MKRPLRRP PSVLRRSVG DP
Sbjct: 1 MKRPLRRPFAVLLFVVLCAAASFPSVLRRSVGPAPVLAPLPPLDPARLNATLLRLAAADP 60
Query: 61 SEAPLRRDVDDLLEGXXXXXXXXXXXXXXXXXXXXXXXXXXQFPVYRRGXXXXXXXXXXX 120
SEAPLRRDVDDLLEG QFPVYRRG
Sbjct: 61 SEAPLRRDVDDLLEGRLPASSARARAWRLRGDRLHLHLRHHQFPVYRRGHHPDHDHDPLL 120
Query: 121 XXXXRQELHLDPXXXXXXXXXXXXXXXDPGVLRNLPSLLSLPGRIPSCAVVGNSGILLGA 180
RQELHLDP DPGVLRNLPSLLSLPGRIPSCAVVGNSGILLGA
Sbjct: 121 HPLPRQELHLDPSLRRALRSWHRLRRHDPGVLRNLPSLLSLPGRIPSCAVVGNSGILLGA 180
Query: 181 SHGALIDSHAAVFRLNNARISGFAANVGAKTNLSFINSNVLHLCARRPNCFCHPYGDGVP 240
SHGALIDSHAAVFRLNNARISGFAANVGAKTNLSFINSNVLHLCARRPNCFCHPYGDGVP
Sbjct: 181 SHGALIDSHAAVFRLNNARISGFAANVGAKTNLSFINSNVLHLCARRPNCFCHPYGDGVP 240
Query: 241 ILLYICQAAHFLDVASCNASSRSLHAASISVTDPRLDVLCARIVKYYSLRRFVAETGRAA 300
ILLYICQAAHFLDVASCNASSRSLHAASISVTDPRLDVLCARIVKYYSLRRFVAETGRAA
Sbjct: 241 ILLYICQAAHFLDVASCNASSRSLHAASISVTDPRLDVLCARIVKYYSLRRFVAETGRAA 300
Query: 301 EEWSSTRDAAMFHYSSGMQAIMVAVGVCDRVSVFGFGKAADAKHHYHSNQKAELDLHDYK 360
EEWSSTRDAAMFHYSSGMQAIMVAVGVCDRVSVFGFGKAADAKHHYHSNQKAELDLHDYK
Sbjct: 301 EEWSSTRDAAMFHYSSGMQAIMVAVGVCDRVSVFGFGKAADAKHHYHSNQKAELDLHDYK 360
Query: 361 AEYAFYRDLADRPEVVPFLNDAGIAVPPVVFYH 393
AEYAFYRDLADRPEVVPFLNDAGIAVPPVVFYH
Sbjct: 361 AEYAFYRDLADRPEVVPFLNDAGIAVPPVVFYH 393
>Os12g0151500 Similar to Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II)
(Sialyltransferase X) (STX)
Length = 396
Score = 296 bits (758), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/246 (59%), Positives = 178/246 (72%), Gaps = 8/246 (3%)
Query: 150 GVLRNLPSLLSLPGRIPSCAVVGNSGILLGASHGALIDSHAAVFRLNNARISGFAANVGA 209
GV+R+L +L R +CAVVGNSG+LLG+ G ID+H V RLNNAR++GFAA+VG
Sbjct: 149 GVMRDLAGVLGR--RYRTCAVVGNSGVLLGSGRGPQIDAHDLVIRLNNARVAGFAADVGV 206
Query: 210 KTNLSFINSNVLHLCA-----RRPNCFCHPYGDGVPILLYICQAAHFLDVASCNASSRSL 264
KT+LSF+NSN+LH+CA R C CHPYG VP+ +Y+CQ AH LD CNA++
Sbjct: 207 KTSLSFVNSNILHICAARNAITRAACGCHPYGGEVPMAMYVCQPAHLLDALICNATATPS 266
Query: 265 HAASISVTDPRLDVLCARIVKYYSLRRFVAETGRAAEEWSSTRDAAMFHYSSGMQAIMVA 324
+ VTD RLD LCARI KYYSLRRFV+ TG A W+ D FHYSSGMQA+++A
Sbjct: 267 SPFPLLVTDARLDALCARIAKYYSLRRFVSATGEPAANWTRRHDERYFHYSSGMQAVVMA 326
Query: 325 VGVCDRVSVFGFGKAADAKHHYHSNQKAELDLHDYKAEYAFYRDLADRPEVVPFLNDA-G 383
+GVCD VS+FGFGK+ AKHHYH+NQK ELDLHDY+AEY FY DL RP VPFL+DA G
Sbjct: 327 LGVCDEVSLFGFGKSPGAKHHYHTNQKKELDLHDYEAEYDFYGDLQARPAAVPFLDDAHG 386
Query: 384 IAVPPV 389
VPPV
Sbjct: 387 FTVPPV 392
>Os04g0506800 Glycosyl transferase, family 29 protein
Length = 384
Score = 294 bits (753), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 158/274 (57%), Positives = 184/274 (67%), Gaps = 29/274 (10%)
Query: 148 DPGVLRNLPSLLSLP----------------GRIPSCAVVGNSGILLGASHGALIDSHAA 191
DPGV+ L L+ P R SCAVVGNSGILL A HG LID H
Sbjct: 110 DPGVMSELVELIKRPIDRYNGDGGGGGEGEGRRYASCAVVGNSGILLAAEHGELIDGHEL 169
Query: 192 VFRLNNARISG--FAANVGAKTNLSFINSNVLHLCA--RRPNCFCHPYGDGVPILLYICQ 247
V RLNNA +A +VGA+T L+F+NSNVL CA RR CFC YG+GVPIL Y+C
Sbjct: 170 VVRLNNAPAGDGRYARHVGARTGLAFLNSNVLSQCAVPRRGACFCRAYGEGVPILTYMCN 229
Query: 248 AAHFLDVASCNASSRSLHAAS-------ISVTDPRLDVLCARIVKYYSLRRFVAETGRAA 300
AAHF++ A CN +S S A+ + VTDPRLD LCARIVKYYSLRRF ETGR A
Sbjct: 230 AAHFVEHAVCNNASSSSSGAADATAAAPVIVTDPRLDALCARIVKYYSLRRFARETGRPA 289
Query: 301 EEWSSTRDAAMFHYSSGMQAIMVAVGVCDRVSVFGFGKAADAKHHYHSNQKAELDLHDYK 360
EEW+ + MFHYSSGMQA++ A GVCDRVSVFGFGK A A+HHYH+ Q+ ELDLHDY+
Sbjct: 290 EEWARRHEEGMFHYSSGMQAVVAAAGVCDRVSVFGFGKDASARHHYHTLQRRELDLHDYE 349
Query: 361 AEYAFYRDLADRPEVVPFL--NDAGIAVPPVVFY 392
AEY FYRDL RPE +PFL ++G +PPV FY
Sbjct: 350 AEYEFYRDLESRPEAIPFLRQRNSGFRLPPVSFY 383
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,972,679
Number of extensions: 346528
Number of successful extensions: 925
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 916
Number of HSP's successfully gapped: 3
Length of query: 393
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 290
Effective length of database: 11,657,759
Effective search space: 3380750110
Effective search space used: 3380750110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 157 (65.1 bits)