BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0852500 Os01g0852500|AK069637
(403 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0852500 ELM2 domain containing protein 612 e-175
Os04g0166400 AT-rich interaction region domain containing p... 120 3e-27
Os10g0446400 Conserved hypothetical protein 83 3e-16
Os03g0425800 Similar to MYBY2 protein (Fragment) 68 1e-11
>Os01g0852500 ELM2 domain containing protein
Length = 403
Score = 612 bits (1577), Expect = e-175, Method: Compositional matrix adjust.
Identities = 309/403 (76%), Positives = 309/403 (76%)
Query: 1 MVGMYQQQLVEDPFPLSGGYCSDQPRHXXXXXXXXXXXXXXXXXXXXXXXQAHGAGEPRR 60
MVGMYQQQLVEDPFPLSGGYCSDQPRH QAHGAGEPRR
Sbjct: 1 MVGMYQQQLVEDPFPLSGGYCSDQPRHAPASASTSTSTSSSAAVAASPLAQAHGAGEPRR 60
Query: 61 LFEAFMGEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWTXXXXXXXXXXXXXXXXXXX 120
LFEAFMGEIL RWT
Sbjct: 61 LFEAFMGEILLPLRGEGGANGGGVGRGPGGVGDLGELLRWTREVAANPVAARPVPAEVKA 120
Query: 121 XKRQVLALRRARYLRMEDVANADELPSFFKKRKYRSHNNHAERQKGKGSMNMPTRKSERL 180
KRQVLALRRARYLRMEDVANADELPSFFKKRKYRSHNNHAERQKGKGSMNMPTRKSERL
Sbjct: 121 RKRQVLALRRARYLRMEDVANADELPSFFKKRKYRSHNNHAERQKGKGSMNMPTRKSERL 180
Query: 181 AKRMKLMTSVLLTQRKKIGVGEHFQAEVPDWTEPPSDELARYKNDPNISKMLGTRIWPPE 240
AKRMKLMTSVLLTQRKKIGVGEHFQAEVPDWTEPPSDELARYKNDPNISKMLGTRIWPPE
Sbjct: 181 AKRMKLMTSVLLTQRKKIGVGEHFQAEVPDWTEPPSDELARYKNDPNISKMLGTRIWPPE 240
Query: 241 GQVLQTDKKIAGQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEWRFDSMGEE 300
GQVLQTDKKIAGQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEWRFDSMGEE
Sbjct: 241 GQVLQTDKKIAGQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEWRFDSMGEE 300
Query: 301 VSKMWTREEQLKFNALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFLMRRVLSQ 360
VSKMWTREEQLKFNALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFLMRRVLSQ
Sbjct: 301 VSKMWTREEQLKFNALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFLMRRVLSQ 360
Query: 361 CRLNLLEIXXXXXXXXXXXXXXXXXXXXXXXRTQHAQNVKSIS 403
CRLNLLEI RTQHAQNVKSIS
Sbjct: 361 CRLNLLEIDSDEDETEEEEDEDQSESTSTSQRTQHAQNVKSIS 403
>Os04g0166400 AT-rich interaction region domain containing protein
Length = 538
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Query: 194 QRKKIGVGEHFQAEVPDWTEPPSDELARYKNDPNISKMLGTRIWPPEG--QVLQTDKKIA 251
QR KI VG FQA+VP WT EL ++ K LGT++WP E + L
Sbjct: 323 QRNKIPVGSEFQAQVPQWT----GELPVSYDNAETRKWLGTKVWPLENGNRKLSYFCNPV 378
Query: 252 GQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEWRFDSMGEEVSKMWTREEQL 311
G+GR C C+ PGS C + H R QLR EL AF W FD MGEE++ WT +E+
Sbjct: 379 GKGREGVCGCNLPGSVECVRFHVAERRLQLRRELDSAFYAWGFDRMGEEIALSWTDKEEA 438
Query: 312 KFNALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFLMRRVLSQCRL 363
F A +L + FW SK R ELV YY N FL+RR Q R+
Sbjct: 439 NFKACVQLNAPSSGRNFWKRLHMLFQSKGRKELVSYYFNCFLLRRRCYQNRM 490
>Os10g0446400 Conserved hypothetical protein
Length = 263
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 206 AEVPDWTEPPSDELARYKNDPNISKMLGTRIWPPEGQVLQTDKKIAGQGRMESCNCSYPG 265
A++P+WT PS Y+ DP++ + LG I P+ + D G+GR + CNC PG
Sbjct: 70 ADIPEWTGKPS---LPYE-DPDMLRFLGEPILTPKNNEVFDD--TIGKGRPDKCNCEVPG 123
Query: 266 SFFCRQHHTDAARDQLRCELGRAFTEWRFDSMGEEVSKMWTREEQLKFNALERLVPVMDH 325
S C + H + +L+ E+G ++ +FD +G++ + W ++E+ KF + +
Sbjct: 124 STSCVRFHVAEKKTELKREMGSSYYAMKFDEIGQDAALTWQKDEEKKFETIVQQNLPSSK 183
Query: 326 KTFWAVASKHLASKTRIELVRYYLNVFLMRRVLSQCRL 363
FW K LV YY NVF RR Q R+
Sbjct: 184 YNFWDKLRAAFRYKGERALVSYYNNVFQPRRRAFQNRV 221
>Os03g0425800 Similar to MYBY2 protein (Fragment)
Length = 520
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 250 IAGQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRA-FTEWRFDSMGEEVSKMWTRE 308
+ GR C CS GS C + H +R+ L+ G F E MGE++++ WT E
Sbjct: 284 VGDHGR--DCGCSDEGSIRCVRRHVLESRENLKRIFGEDKFRELGLCDMGEDIAQRWTDE 341
Query: 309 EQLKFNALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFLMRRVLSQCRLNLLEI 368
E+ F + P K FW + L KT +ELV YY NVF++R+ Q R L +
Sbjct: 342 EESLFYRVVYSNPPSLGKNFWHFLPRALPGKTSMELVSYYFNVFMLRKRAQQNRSEPLHV 401
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,587,212
Number of extensions: 383202
Number of successful extensions: 798
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 792
Number of HSP's successfully gapped: 4
Length of query: 403
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 300
Effective length of database: 11,657,759
Effective search space: 3497327700
Effective search space used: 3497327700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)