BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0837500 Os01g0837500|AK105439
(455 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0837500 Similar to Ruvbl1 protein 891 0.0
Os06g0186900 AAA ATPase domain containing protein 344 7e-95
Os07g0178900 TIP49, C-terminal domain containing protein 178 9e-45
>Os01g0837500 Similar to Ruvbl1 protein
Length = 455
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/455 (97%), Positives = 443/455 (97%)
Query: 1 MRIEEVQSAAKKQRIATHTHIKGLGLDANGAAIGLASGFVGQAAAREAAGLVVDMIRQKK 60
MRIEEVQSAAKKQRIATHTHIKGLGLDANGAAIGLASGFVGQAAAREAAGLVVDMIRQKK
Sbjct: 1 MRIEEVQSAAKKQRIATHTHIKGLGLDANGAAIGLASGFVGQAAAREAAGLVVDMIRQKK 60
Query: 61 MXXXXXXXXXXXXTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAI 120
M TGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAI
Sbjct: 61 MAGRALLLAGPPATGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAI 120
Query: 121 GLRIKENKEVYEGEVTELSPEEAESTTSGYGKSISHVIIGLKTVKGTKQLKLDPTIYDAL 180
GLRIKENKEVYEGEVTELSPEEAESTTSGYGKSISHVIIGLKTVKGTKQLKLDPTIYDAL
Sbjct: 121 GLRIKENKEVYEGEVTELSPEEAESTTSGYGKSISHVIIGLKTVKGTKQLKLDPTIYDAL 180
Query: 181 IKEKVAVGDVIYIEANSGAVKRVGRCDSFATEYDLEAEEYVPIPKGEVHKKKEIVQDVTL 240
IKEKVAVGDVIYIEANSGAVKRVGRCDSFATEYDLEAEEYVPIPKGEVHKKKEIVQDVTL
Sbjct: 181 IKEKVAVGDVIYIEANSGAVKRVGRCDSFATEYDLEAEEYVPIPKGEVHKKKEIVQDVTL 240
Query: 241 HDLDAANAQPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGIAELVPGVLF 300
HDLDAANAQPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGIAELVPGVLF
Sbjct: 241 HDLDAANAQPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGIAELVPGVLF 300
Query: 301 IDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNVRGTDMTSPHGIPVDLLDRLVII 360
IDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNVRGTDMTSPHGIPVDLLDRLVII
Sbjct: 301 IDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNVRGTDMTSPHGIPVDLLDRLVII 360
Query: 361 RTETYGPTEMIQILAIRAQVEEIEIDEESLAFLGEIGQQTSLRHAIQLLSPASVVAKANG 420
RTETYGPTEMIQILAIRAQVEEIEIDEESLAFLGEIGQQTSLRHAIQLLSPASVVAKANG
Sbjct: 361 RTETYGPTEMIQILAIRAQVEEIEIDEESLAFLGEIGQQTSLRHAIQLLSPASVVAKANG 420
Query: 421 REKISKADLEEVSGLYLDAKSSARLLQEQQERYIT 455
REKISKADLEEVSGLYLDAKSSARLLQEQQERYIT
Sbjct: 421 REKISKADLEEVSGLYLDAKSSARLLQEQQERYIT 455
>Os06g0186900 AAA ATPase domain containing protein
Length = 476
Score = 344 bits (883), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 194/466 (41%), Positives = 290/466 (62%), Gaps = 23/466 (4%)
Query: 2 RIEEVQSAAKKQRIATHTHIKGLGLDANGAAIGLASGFVGQAAAREAAGLVVDMIRQKKM 61
R+ E + + +RI H+HI+GLGLD++ A G + G VGQ AR AAGL++ +IRQ K+
Sbjct: 6 RLSESRDLTRIERIGAHSHIRGLGLDSSLEARGSSEGMVGQLPARRAAGLILQLIRQGKI 65
Query: 62 XXXXXXXXXXXXTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIG 121
TGKTALA+GI++ LG++ PF + SE++S ++ KTE L + FRR+IG
Sbjct: 66 AGRAVLLAGQPGTGKTALAMGIAKSLGAETPFASVAASELFSLDLSKTEALTQAFRRSIG 125
Query: 122 LRIKENKEVYEGEVTELSPEE-----------AESTTSGYGKSISHVIIGLKTVKGTKQL 170
+RIKE E+ EGEV E+S + A S + GK+ + LKT
Sbjct: 126 VRIKEEAEIIEGEVVEISIDRPVSAAAAAGSSAPSGVAAAGKTGR---LTLKTTDMETVY 182
Query: 171 KLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRCDSFATEYDLEA--EEYVPIPKGEV 228
+L + +AL KEKV GDV+ ++ SG V ++GR + +YD ++V P+GE+
Sbjct: 183 ELGGKMIEALGKEKVQSGDVVALDKASGKVTKLGRSIGRSRDYDAVGPHTKFVKCPEGEL 242
Query: 229 HKKKEIVQDVTLHDLDAANAQPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYID 288
K+KE+V VTLH++D N++ QG L+L EI ++R++I+ V + +
Sbjct: 243 QKRKEVVHCVTLHEIDVINSRTQG---FLALF----TGDTGEIRAEVREQIDTKVAEWRE 295
Query: 289 EGIAELVPGVLFIDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNVRGTDMTSPHG 348
EG AE+VPGVLFIDEVHMLDIECFS+LNRALE+ ++PI+++ATNRGI ++RGT+ SPHG
Sbjct: 296 EGKAEIVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVIATNRGITSIRGTNYRSPHG 355
Query: 349 IPVDLLDRLVIIRTETYGPTEMIQILAIRAQVEEIEIDEESLAFLGEIGQQTSLRHAIQL 408
IP D LDRL+II T+ Y ++ +IL IR E++E+ ++ L +IG +TSLR+AI L
Sbjct: 356 IPPDFLDRLLIITTQPYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHL 415
Query: 409 LSPASVVAKANGREKISKADLEEVSGLYLDAKSSARLLQEQQERYI 454
++ A++ + + + D+ V L+LD K S + L E Q +Y+
Sbjct: 416 ITSAALACQKRKGKVVEMEDISRVYQLFLDVKRSTQYLMEYQSQYM 461
>Os07g0178900 TIP49, C-terminal domain containing protein
Length = 110
Score = 178 bits (451), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 90/98 (91%), Positives = 92/98 (93%)
Query: 96 MVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEEAESTTSGYGKSIS 155
MVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEEAESTT GYGKSIS
Sbjct: 1 MVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEEAESTTGGYGKSIS 60
Query: 156 HVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYI 193
HVIIGLKTVKGTKQLKLDPTIYDALIKEKV+ Y+
Sbjct: 61 HVIIGLKTVKGTKQLKLDPTIYDALIKEKVSCSSPSYL 98
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,171,949
Number of extensions: 517498
Number of successful extensions: 1137
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1134
Number of HSP's successfully gapped: 3
Length of query: 455
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 351
Effective length of database: 11,605,545
Effective search space: 4073546295
Effective search space used: 4073546295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)