Os07g0178900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TIP49, C-terminal domain containing protein.
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Os07g0178900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TIP49, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.97 | 0.301 | 10.4 | 0.194 | 0.326 | 1.03 | -0.536 | 0.0532 | -0.0331 | 17.4 | 24.94 | 702 | -- | -- |
| 40.96 | 0.298 | 10.4 | 0.199 | 0.332 | 1.03 | -0.543 | -- | -0.0342 | 17.4 | 24.9 | 678 | -- | -- |
| 41.59 | 0.3 | 10.4 | 0.169 | 0.334 | 1 | -- | 0.141 | -0.0456 | 17 | 24.8 | 655 | -- | -- |
| 41.63 | 0.301 | 10.4 | 0.192 | 0.336 | 1.02 | -- | -- | -0.0344 | 17 | 24.8 | 647 | -- | -- |
| 46.49 | 0.318 | 10.4 | 0.194 | -- | 0.959 | -- | 0.0514 | -0.0496 | -- | 25.08 | 953 | -- | -- |
| 56.49 | 0.352 | 10.5 | -0.0759 | 0.312 | -- | -0.295 | -- | -0.244 | 15.7 | -- | -- | -- | -- |
| 56.71 | 0.353 | 10.5 | -0.0803 | 0.309 | -- | -- | -- | -0.245 | 15.4 | -- | -- | -- | -- |
| 46.26 | 0.317 | 10.4 | 0.198 | -- | 1.04 | -- | -- | -0.0509 | -- | 31.97 | 1172 | -- | -- |
| 42.55 | 0.304 | 10.4 | -- | 0.318 | 0.927 | -- | -- | -0.0783 | 16.8 | 24.8 | 634 | -- | -- |
| 62.09 | 0.368 | 10.5 | -0.0934 | -- | -- | -- | -- | -0.254 | -- | -- | -- | -- | -- |
| 56.88 | 0.353 | 10.5 | -- | 0.311 | -- | -- | -- | -0.236 | 15.4 | -- | -- | -- | -- |
| 47 | 0.319 | 10.4 | -- | -- | 0.892 | -- | -- | -0.115 | -- | 35.7 | 1173 | -- | -- |
| 62.32 | 0.368 | 10.5 | -- | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 2 | 36.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 3 | 36.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 30 | 38.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 7 |
| 32 | 38.39 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 41 | 38.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 57 | 38.81 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 58 | 38.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 73 | 39.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 80 | 39.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 16 |
| 118 | 39.51 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 15 |
| 177 | 39.84 | temperature | 10 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 179 | 39.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 251 | 40.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 276 | 40.25 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 7 |
| 281 | 40.26 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 5 |
| 512 | 41.02 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 515 | 41.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 580 | 41.22 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 20 |
| 586 | 41.23 | temperature | 10 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 608 | 41.34 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 671 | 41.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 685 | 41.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 731 | 41.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 778 | 41.89 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 10 |
| 794 | 41.92 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 18 |
| 817 | 41.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 890 | 42.21 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 899 | 42.24 | humidity | 70 | 270 | > th | dose independent | rect. | 17 | 10 |
| 908 | 42.25 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 914 | 42.27 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |