BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0178900 Os07g0178900|J100054F10
         (110 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22330.1  | chr5:7391026-7394071 REVERSE LENGTH=459            167   9e-43
AT3G49830.1  | chr3:18482383-18483940 FORWARD LENGTH=474           59   4e-10

>AT5G22330.1 | chr5:7391026-7394071 REVERSE LENGTH=459
          Length = 458

 Score =  167 bits (423), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 85/98 (86%), Positives = 88/98 (89%)

Query: 1   MVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEEAESTTGGYGKSIS 60
           MVGSEVYSSEVKKTEVLMENFRRAIGLRIKE KEVYEGEVTELSPEE ES TGGYGKSIS
Sbjct: 99  MVGSEVYSSEVKKTEVLMENFRRAIGLRIKETKEVYEGEVTELSPEETESLTGGYGKSIS 158

Query: 61  HVIIGLKTVKGTKQLKLDPTIYDALIKEKVSCSSPSYL 98
           HV+I LKTVKGTK LKLDPTIYDALIKEKV+     Y+
Sbjct: 159 HVVITLKTVKGTKHLKLDPTIYDALIKEKVAVGDVIYI 196



>AT3G49830.1 | chr3:18482383-18483940 FORWARD LENGTH=474
          Length = 473

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 1   MVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEEAESTTGGYGKSIS 60
           + GSE++S E+ KTE L + FR+AIG+RIKE  +V EGEV  +S +   S+ G   K+  
Sbjct: 99  IAGSEIFSLEMSKTEALTQAFRKAIGVRIKEETDVIEGEVVTISIDRPASSGGSVKKTGK 158

Query: 61  HVIIGLKTVKGTKQLKLDPTIYDALIKEKVSCSSPSYLVLD 101
              I +KT        L   + + L KEKV   S   +VLD
Sbjct: 159 ---ITMKTTDMESNFDLGWKLIEPLDKEKV--QSGDVIVLD 194



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,429,516
Number of extensions: 91881
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 3
Length of query: 110
Length of database: 11,106,569
Length adjustment: 79
Effective length of query: 31
Effective length of database: 8,940,705
Effective search space: 277161855
Effective search space used: 277161855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)