BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0830100 Os01g0830100|AK069755
(456 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0830100 Pyridine nucleotide-disulphide oxidoreductase,... 905 0.0
Os07g0564500 Pyridine nucleotide-disulphide oxidoreductase,... 557 e-159
Os05g0331200 Similar to External rotenone-insensitive NADPH... 243 2e-64
Os06g0684000 Similar to External rotenone-insensitive NADPH... 234 7e-62
>Os01g0830100 Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
domain containing protein
Length = 456
Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/456 (97%), Positives = 443/456 (97%)
Query: 1 MAAXXXXXXXXXXXXXGCVGGAGPSPFHHSRLPYSPFSTAAADAVERRGFAGLGPTAKGE 60
MAA GCVGGAGPSPFHHSRLPYSPFSTAAADAVERRGFAGLGPTAKGE
Sbjct: 1 MAASSLLRSLSRISRRGCVGGAGPSPFHHSRLPYSPFSTAAADAVERRGFAGLGPTAKGE 60
Query: 61 KARVVVLGTGWAGSRLMKDIDTTGYEVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPLA 120
KARVVVLGTGWAGSRLMKDIDTTGYEVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPLA
Sbjct: 61 KARVVVLGTGWAGSRLMKDIDTTGYEVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPLA 120
Query: 121 RIQPAVSKSPGSYFLLARCTAVDPDAHTIDCETVTEGEKDTLKPWKFKVAYDKLVFACGA 180
RIQPAVSKSPGSYFLLARCTAVDPDAHTIDCETVTEGEKDTLKPWKFKVAYDKLVFACGA
Sbjct: 121 RIQPAVSKSPGSYFLLARCTAVDPDAHTIDCETVTEGEKDTLKPWKFKVAYDKLVFACGA 180
Query: 181 EASTFGIRGVTDHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKRRLLHCVVVGGGP 240
EASTFGIRGVTDHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKRRLLHCVVVGGGP
Sbjct: 181 EASTFGIRGVTDHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKRRLLHCVVVGGGP 240
Query: 241 TGVEFSGELSDFIIRDVKQRYSHVKDYIHVTLIEANEILSSFDVRLRQYATNQLTKSGVR 300
TGVEFSGELSDFIIRDVKQRYSHVKDYIHVTLIEANEILSSFDVRLRQYATNQLTKSGVR
Sbjct: 241 TGVEFSGELSDFIIRDVKQRYSHVKDYIHVTLIEANEILSSFDVRLRQYATNQLTKSGVR 300
Query: 301 LVRGIVKDVQPNKLILDNGEEVPYGLLVWSTGVGPSSFVKSLPFPKSPGGRIGVDEWLRV 360
LVRGIVKDVQPNKLILDNGEEVPYGLLVWSTGVGPSSFVKSLPFPKSPGGRIGVDEWLRV
Sbjct: 301 LVRGIVKDVQPNKLILDNGEEVPYGLLVWSTGVGPSSFVKSLPFPKSPGGRIGVDEWLRV 360
Query: 361 PSARDVFAIGDCSGFLESTGKDVLPALAQVAERQGKYLAHLLNHVMKAGGGHANCEIDVD 420
PSARDVFAIGDCSGFLESTGKDVLPALAQVAERQGKYLAHLLNHVMKAGGGHANCEIDVD
Sbjct: 361 PSARDVFAIGDCSGFLESTGKDVLPALAQVAERQGKYLAHLLNHVMKAGGGHANCEIDVD 420
Query: 421 LGPAFVYKHLGSMATVGRYKALVDLRQSKAGYCFCL 456
LGPAFVYKHLGSMATVGRYKALVDLRQSKAGYCFCL
Sbjct: 421 LGPAFVYKHLGSMATVGRYKALVDLRQSKAGYCFCL 456
>Os07g0564500 Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
domain containing protein
Length = 562
Score = 557 bits (1436), Expect = e-159, Method: Compositional matrix adjust.
Identities = 279/398 (70%), Positives = 329/398 (82%), Gaps = 2/398 (0%)
Query: 53 LGPTAKGEKARVVVLGTGWAGSRLMKDIDTTGYEVVCVSPRNHMVFTPLLASTCVGTLEF 112
LGPT GEK RVVVLGTGWA R +KD+DT Y+VVC+SPRNHMVFTPLLASTCVGTLEF
Sbjct: 115 LGPTRPGEKPRVVVLGTGWAACRFLKDVDTRAYDVVCISPRNHMVFTPLLASTCVGTLEF 174
Query: 113 RSVAEPLARIQPAVSKSPGSYFLLARCTAVDPDAHTIDCETVTEGEKDTLKPWKFKVAYD 172
RSV EP++RIQ A++ PGSYF LA CT +D H + C T +G+ P+ FKV+YD
Sbjct: 175 RSVVEPVSRIQSALATRPGSYFFLASCTGIDTGRHEVHC-TAADGDGLPANPYNFKVSYD 233
Query: 173 KLVFACGAEASTFGIRGVTDHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKRRLLH 232
KLV A G+E TFGI+GV ++AIFLREV HAQEIRRKLL NLMLS+ PG+SEEEK+RLLH
Sbjct: 234 KLVIASGSEPLTFGIKGVAENAIFLREVSHAQEIRRKLLTNLMLSENPGLSEEEKKRLLH 293
Query: 233 CVVVGGGPTGVEFSGELSDFIIRDVKQRYSHVKDYIHVTLIEANEILSSFDVRLRQYATN 292
CVVVGGGPTGVEFSGELSDFI RDV++RY+HVKDY+ VTLIEANEILSSFDV LRQYAT+
Sbjct: 294 CVVVGGGPTGVEFSGELSDFITRDVRERYAHVKDYVKVTLIEANEILSSFDVGLRQYATD 353
Query: 293 QLTKSGVRLVRGIVKDVQPNKLILDNGEEVPYGLLVWSTGVGPSSFVKSLPFPKSPGGRI 352
L+K GV LVRG+VK+V+P ++ L +G VPYG+LVWSTGVGPS FV+SLP PKSPGGRI
Sbjct: 354 HLSKYGVNLVRGVVKEVKPREIELSDGSRVPYGVLVWSTGVGPSEFVRSLPLPKSPGGRI 413
Query: 353 GVDEWLRVPSARDVFAIGDCSGFLESTGKDVLPALAQVAERQGKYLAHLLNHVMKAGGGH 412
GVDEWLRVPS DVFA+GDC+GFLE TG+ VLPALAQVAER+G+YLA +++ + GG
Sbjct: 414 GVDEWLRVPSVEDVFALGDCAGFLEGTGRAVLPALAQVAEREGRYLARVMSRIAAQDGGR 473
Query: 413 ANCEI-DVDLGPAFVYKHLGSMATVGRYKALVDLRQSK 449
A + +LG FVYKH+GSMA+VGRYKALVDLR++K
Sbjct: 474 AGRAVGSAELGEPFVYKHIGSMASVGRYKALVDLRENK 511
>Os05g0331200 Similar to External rotenone-insensitive NADPH dehydrogenase
Length = 575
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 206/346 (59%), Gaps = 22/346 (6%)
Query: 61 KARVVVLGTGWAGSRLMKDIDTTGYEVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPLA 120
K RVV++GTGWAG+ +++IDT+ Y+V VSPRN+ FTPLL S GT+E RS+ EP+
Sbjct: 55 KKRVVIVGTGWAGASFLRNIDTSLYDVHVVSPRNYFTFTPLLPSVTCGTVEARSIVEPIR 114
Query: 121 RIQPAVSKSPGSY-FLLARCTAVDPDAHTIDCETVTEGEKDTLKPWKFKVAYDKLVFACG 179
I V K G++ F A C +DP I C + ++G + F V YD LV + G
Sbjct: 115 NI---VRKRGGAFRFWEAECYKIDPTNKKIHCRSDSDGNSE------FVVDYDYLVVSVG 165
Query: 180 AEASTFGIRGVTDHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKRRLLHCVVVGGG 239
A +TF GV ++ FL+EV AQ+IR+ +L + +P ++EEE+++ LH VV+GGG
Sbjct: 166 ARPNTFNTPGVVENCHFLKEVEDAQKIRKSVLKCFERASLPNLTEEERKKNLHFVVIGGG 225
Query: 240 PTGVEFSGELSDFIIRDVKQRYSHVKDYIHVTLIEA-NEILSSFDVRLRQYATNQLTKSG 298
PTGVEF+ EL DF+ D+ + Y VK Y ++++IEA + IL+ FD R+ Q+A ++ ++G
Sbjct: 226 PTGVEFAAELHDFVNEDLAKLYPDVKKYANISVIEAGDHILTMFDKRITQFAEDKFKRTG 285
Query: 299 VRLVRGI-VKDVQPNKLILDN---GE-EVPYGLLVWSTGVGPSSFVKSLPFPKSPGGR-- 351
+ L V V + + N GE VPYG+ VWSTG+G + + F K G
Sbjct: 286 IDLKTNFKVVKVSDKAITMTNSATGEIAVPYGMAVWSTGIGTRPLI--MDFMKQVGQANR 343
Query: 352 --IGVDEWLRVPSARDVFAIGDCSGFLESTGKDVLPALAQVAERQG 395
+ DEWLRV DV+A+GDC+ + + + ++ +VA++
Sbjct: 344 RVLATDEWLRVHGCDDVYALGDCATITQRKVMEDIASIFRVADKDN 389
>Os06g0684000 Similar to External rotenone-insensitive NADPH dehydrogenase
Length = 588
Score = 234 bits (598), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 197/347 (56%), Gaps = 20/347 (5%)
Query: 61 KARVVVLGTGWAGSRLMKDIDTTGYEVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPLA 120
K +VVVLGTGWAG+ +KD+D + YEV +SPRN+ FTPLL S GT+E RS+ EP+
Sbjct: 62 KKKVVVLGTGWAGTSFLKDLDCSKYEVKVISPRNYFAFTPLLPSVTCGTVEARSIVEPIR 121
Query: 121 RIQPAVSKSPGSYFLLARCTAVDPDAHTIDCETVT----EGEKDTLKPWKFKVAYDKLVF 176
++ K F A C +D + C + +G D F V YD LV
Sbjct: 122 KMLEKKRKDVA--FYEAECFKIDASKKAVHCRSAVGTNFDGNGD------FMVDYDYLVV 173
Query: 177 ACGAEASTFGIRGVTDHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKRRLLHCVVV 236
A GA +TF GV ++ FL+EV AQ+IRR ++ + +P ISEEEKR++LH V++
Sbjct: 174 ALGATVNTFNTPGVMENCYFLKEVEDAQKIRRNVIDCFEKASLPNISEEEKRKILHFVII 233
Query: 237 GGGPTGVEFSGELSDFIIRDVKQRYSHVKDYIHVTLIEANE-ILSSFDVRLRQYATNQLT 295
GGGPTGVEF+ E+ DF++ D+ + Y ++D++ +T+I++ E IL+ FD R+ +A +
Sbjct: 234 GGGPTGVEFAAEMHDFLVEDLVKLYPAIQDFVKITIIQSGEHILNMFDQRIATFAEMKFQ 293
Query: 296 KSGVRLVRGI-VKDVQPNKLILDN---GE-EVPYGLLVWSTGVGPSSFVKSLPFPKSPGG 350
+ G+ + G V V + + + + GE VPYG+ VWS G+G +
Sbjct: 294 RDGIEVNTGFRVVKVSDDLITMKSKSLGEVSVPYGMAVWSAGIGTRPVIMDFMQQIGQTN 353
Query: 351 R--IGVDEWLRVPSARDVFAIGDCSGFLESTGKDVLPALAQVAERQG 395
R + +EWLRV +++AIGDC+ + D + + ++A++
Sbjct: 354 RRVLATNEWLRVHECDNIYAIGDCASITQRKIMDDISTVFKMADKDN 400
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,067,673
Number of extensions: 714698
Number of successful extensions: 1723
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1713
Number of HSP's successfully gapped: 4
Length of query: 456
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 352
Effective length of database: 11,605,545
Effective search space: 4085151840
Effective search space used: 4085151840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)