BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0827200 Os01g0827200|AK120476
(504 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0827200 Phox-like domain containing protein 865 0.0
Os05g0346100 Phox-like domain containing protein 324 1e-88
Os05g0474500 Conserved hypothetical protein 93 4e-19
>Os01g0827200 Phox-like domain containing protein
Length = 504
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/504 (85%), Positives = 430/504 (85%)
Query: 1 MVGADAESSAVVDAGEGHGXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXAIADHDAFIEE 60
MVGADAESSAVVDAGEGHG H AIADHDAFIEE
Sbjct: 1 MVGADAESSAVVDAGEGHGDLALDSSSAASTDPLLHPPPSPSSTPSSPTAIADHDAFIEE 60
Query: 61 DGEDDSAPHVPSASDEAAPEFVQITVSEPKKHAEPAAGAAGVIPGSGSYFSYLITTRAAX 120
DGEDDSAPHVPSASDEAAPEFVQITVSEPKKHAEPAAGAAGVIPGSGSYFSYLITTRAA
Sbjct: 61 DGEDDSAPHVPSASDEAAPEFVQITVSEPKKHAEPAAGAAGVIPGSGSYFSYLITTRAAD 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXYRGLFVPARPDKSIVEGQVMQRHEFVNQRCAALQRYL 180
YRGLFVPARPDKSIVEGQVMQRHEFVNQRCAALQRYL
Sbjct: 121 GGLFRVRRRFRDVVALADRLAAAYRGLFVPARPDKSIVEGQVMQRHEFVNQRCAALQRYL 180
Query: 181 GRLAAHPTIGRSAELHDFLTEPSGIPTSAGESPRSDXXXXXXXXXXXXXXXXXXXXXGRD 240
GRLAAHPTIGRSAELHDFLTEPSGIPTSAGESPRSD GRD
Sbjct: 181 GRLAAHPTIGRSAELHDFLTEPSGIPTSAGESPRSDPALSAAMSAAAVTAPTAPAKPGRD 240
Query: 241 IFGMFKDLKQTVANGLVAVRPPPVEEETDAKFVMHKAKLEYFEQHLTTASQQVEALLKAY 300
IFGMFKDLKQTVANGLVAVRPPPVEEETDAKFVMHKAKLEYFEQHLTTASQQVEALLKAY
Sbjct: 241 IFGMFKDLKQTVANGLVAVRPPPVEEETDAKFVMHKAKLEYFEQHLTTASQQVEALLKAY 300
Query: 301 DDLKATTGQLGMTFIKLAKFEKEQDTCNSQRKRAVDMSNFANAVINMSRSQTKLNAKIEI 360
DDLKATTGQLGMTFIKLAKFEKEQDTCNSQRKRAVDMSNFANAVINMSRSQTKLNAKIEI
Sbjct: 301 DDLKATTGQLGMTFIKLAKFEKEQDTCNSQRKRAVDMSNFANAVINMSRSQTKLNAKIEI 360
Query: 361 HLGTIYEYLETMTSVRNAFTDRANALLRVQSLSGDLFLLHTQAAKLESVSSRGMGQERLR 420
HLGTIYEYLETMTSVRNAFTDRANALLRVQSLSGDLFLLHTQAAKLESVSSRGMGQERLR
Sbjct: 361 HLGTIYEYLETMTSVRNAFTDRANALLRVQSLSGDLFLLHTQAAKLESVSSRGMGQERLR 420
Query: 421 YQKIEELKETIRKTEDAKGNARQEYELIKENNMNEIIRFNKEKRHGLVEMLKGFVRNQVS 480
YQKIEELKETIRKTEDAKGNARQEYELIKENNMNEIIRFNKEKRHGLVEMLKGFVRNQVS
Sbjct: 421 YQKIEELKETIRKTEDAKGNARQEYELIKENNMNEIIRFNKEKRHGLVEMLKGFVRNQVS 480
Query: 481 YSEHISSIWTKVAEETTGYTGKGS 504
YSEHISSIWTKVAEETTGYTGKGS
Sbjct: 481 YSEHISSIWTKVAEETTGYTGKGS 504
>Os05g0346100 Phox-like domain containing protein
Length = 540
Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 189/434 (43%), Positives = 250/434 (57%), Gaps = 20/434 (4%)
Query: 80 EFVQITVSEPKKHAEPAAGAAGVIPGSG-SYFSYLITT-RAAXXXXXXXXXXXXXXXXXX 137
++ I VS+P AEPAA ++PGS +Y SYL+T+ R
Sbjct: 103 DYALIAVSDPTPEAEPAA--TSLVPGSAPTYISYLVTSARRGDHRRHAVRRRFRDFVTLA 160
Query: 138 XXXXXXYRGLFVPARPDKSIVEGQVMQRHEFVNQRCAALQRYLGRLAAHPTIGRSAELHD 197
+RG FVP RPDK+ VE QVMQR EFV QR AAL+RYL RLA HP IG S EL
Sbjct: 161 DRLAEAFRGHFVPPRPDKNTVESQVMQRDEFVAQRRAALERYLWRLAEHPAIGPSDELRV 220
Query: 198 FLTEPSGIPT------------SAGESPRSDXXXXXXXXXXXXXXXXXXXXXGRDIFGMF 245
FL +P A PR GRD+ +F
Sbjct: 221 FLQAEGKMPLPSTTDVASRMLDGAARLPRQ--LLAGEEAVAAPQEVVQPAKGGRDLLRIF 278
Query: 246 KDLKQTVANGLVAVRPPPVEEETDAKFVMHKAKLEYFEQHLTTASQQVEALLKAYDDLKA 305
K+LKQ+V + VRPP VEE D +F+ K KL+ +EQ LT+ASQQ EAL+KA D+
Sbjct: 279 KELKQSVVSDWGGVRPPLVEE--DKEFLDKKQKLQDWEQQLTSASQQAEALVKAQQDMGE 336
Query: 306 TTGQLGMTFIKLAKFEKEQDTCNSQRKRAVDMSNFANAVINMSRSQTKLNAKIEIHLGTI 365
T G LG+ FIKL KFE E+ +SQR RA D A A + SR+ LN + +L T+
Sbjct: 337 TMGALGLAFIKLTKFETEEAMYDSQRIRAADSKRIATAAVKASRACRDLNTQTVKYLDTL 396
Query: 366 YEYLETMTSVRNAFTDRANALLRVQSLSGDLFLLHTQAAKLESVSSRGMGQERLRYQKIE 425
+E+L M SV AF+DR++ALL VQ+L DL L + KLE+ +S+ G ++ R +K+E
Sbjct: 397 HEHLGIMLSVHTAFSDRSSALLTVQTLMSDLASLQLRIEKLEAAASKIFGGDKSRLRKVE 456
Query: 426 ELKETIRKTEDAKGNARQEYELIKENNMNEIIRFNKEKRHGLVEMLKGFVRNQVSYSEHI 485
EL+ETIR TEDAK A +EYE IKENN +E+ R ++EK+ ++EM+KG+V +Q +Y+E I
Sbjct: 457 ELRETIRATEDAKCCALREYERIKENNRSELNRLDREKKEDMLEMIKGYVTSQAAYAEKI 516
Query: 486 SSIWTKVAEETTGY 499
W VAEET+GY
Sbjct: 517 VEGWETVAEETSGY 530
>Os05g0474500 Conserved hypothetical protein
Length = 89
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 55/69 (79%)
Query: 294 EALLKAYDDLKATTGQLGMTFIKLAKFEKEQDTCNSQRKRAVDMSNFANAVINMSRSQTK 353
EAL+KA DDL+ TT LGMT IKLAKFE+EQ TC+ QR+RA D++NF ++V+ SRSQ K
Sbjct: 2 EALVKARDDLRTTTAHLGMTLIKLAKFEREQATCSPQRRRAADINNFGSSVVKFSRSQAK 61
Query: 354 LNAKIEIHL 362
LN++I HL
Sbjct: 62 LNSEIVKHL 70
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,799,357
Number of extensions: 484556
Number of successful extensions: 1273
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1269
Number of HSP's successfully gapped: 4
Length of query: 504
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 399
Effective length of database: 11,553,331
Effective search space: 4609779069
Effective search space used: 4609779069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)