Os05g0474500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0474500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.37 | 0.201 | 10.5 | 0.909 | 0.452 | -0.624 | -0.707 | 0.916 | 0.397 | 12.6 | 25.9 | 1353 | -- | -- |
| 19.68 | 0.207 | 10.5 | 0.718 | 0.531 | -0.463 | -0.826 | -- | 0.304 | 12.9 | 26.4 | 1372 | -- | -- |
| 20.4 | 0.21 | 10.5 | 0.911 | 0.44 | -0.64 | -- | 1.13 | 0.407 | 12.7 | 25.99 | 1312 | -- | -- |
| 21.72 | 0.217 | 10.6 | 0.648 | 0.497 | -0.553 | -- | -- | 0.326 | 12.7 | 25.4 | 1430 | -- | -- |
| 27.38 | 0.244 | 10.5 | 0.98 | -- | -0.789 | -- | 1.28 | 0.485 | -- | 25.6 | 1023 | -- | -- |
| 28.01 | 0.248 | 10.6 | 0.455 | 0.517 | -- | -0.717 | -- | 0.136 | 12.8 | -- | -- | -- | -- |
| 30.18 | 0.257 | 10.6 | 0.429 | 0.519 | -- | -- | -- | 0.133 | 12.8 | -- | -- | -- | -- |
| 29.22 | 0.252 | 10.5 | 0.624 | -- | -0.709 | -- | -- | 0.371 | -- | 25.6 | 1020 | -- | -- |
| 30.17 | 0.256 | 10.6 | -- | 0.454 | -0.401 | -- | -- | 0.212 | 12.6 | 25.4 | 1321 | -- | -- |
| 46.97 | 0.32 | 10.6 | 0.409 | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
| 35.02 | 0.277 | 10.6 | -- | 0.512 | -- | -- | -- | 0.0851 | 12.8 | -- | -- | -- | -- |
| 38.76 | 0.29 | 10.6 | -- | -- | -0.582 | -- | -- | 0.262 | -- | 25.53 | 1006 | -- | -- |
| 51.39 | 0.335 | 10.6 | -- | -- | -- | -- | -- | 0.0778 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 3 | 18.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 10 | 18.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 37 | 18.41 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 149 | 18.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 150 | 18.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 17 |
| 238 | 18.68 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 256 | 18.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 280 | 18.71 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 310 | 18.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 323 | 18.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 433 | 18.81 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 437 | 18.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 441 | 18.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 554 | 18.87 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 602 | 18.90 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |
| 648 | 18.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 666 | 18.93 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 819 | 18.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 916 | 19.02 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 918 | 19.02 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 944 | 19.03 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 945 | 19.03 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 16 |