BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0824900 Os01g0824900|AK061414
(224 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0824900 Conserved hypothetical protein 311 2e-85
Os05g0476000 Conserved hypothetical protein 114 5e-26
Os01g0166500 Conserved hypothetical protein 67 1e-11
>Os01g0824900 Conserved hypothetical protein
Length = 224
Score = 311 bits (798), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/224 (73%), Positives = 165/224 (73%)
Query: 1 MPPNAAEVARPKSPLRGILPQSPLRIKQDGKFYERLLAKERSAASRSFRHYWAAEPGSVP 60
MPPNAAEVARPKSPLRGILPQSPLRIKQDGKFYERLLAKERSAASRSFRHYWAAEPGSVP
Sbjct: 1 MPPNAAEVARPKSPLRGILPQSPLRIKQDGKFYERLLAKERSAASRSFRHYWAAEPGSVP 60
Query: 61 FVWESQPGTPKVDVSRMVAGAVPAITPPPSYLLRHXXXXXXXXXXXXXXXXXXXXXXXXX 120
FVWESQPGTPKVDVSRMVAGAVPAITPPPSYLLRH
Sbjct: 61 FVWESQPGTPKVDVSRMVAGAVPAITPPPSYLLRHGGKAGAAAPAAPRRRPQGKGKAKTG 120
Query: 121 XXXRYRFKRIKIGFLAGIFRRIALGHXXXXXXXXXXXXXXXXXXXXXXAATAPEKAEHLD 180
RYRFKRIKIGFLAGIFRRIALGH AATAPEKAEHLD
Sbjct: 121 GKTRYRFKRIKIGFLAGIFRRIALGHVWRRSAASVQVSSLSSRWLFSSAATAPEKAEHLD 180
Query: 181 HDTXXXXXXXXXNTELSTRARARPSLWMLRFRGFRSWSRDDGWA 224
HDT NTELSTRARARPSLWMLRFRGFRSWSRDDGWA
Sbjct: 181 HDTPAPPPPPRPNTELSTRARARPSLWMLRFRGFRSWSRDDGWA 224
>Os05g0476000 Conserved hypothetical protein
Length = 215
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 20 PQSPLRIKQDGKFYERLLAKERSAASRSFRHYWAAEPGSVPFVWESQPGTPKVDVSR--M 77
PQSPLRI DG+FY RLL KE S + SFR+Y A G+VPFVWES PGTPKVD S
Sbjct: 5 PQSPLRITHDGEFYARLLTKESSQGNPSFRYYGAGT-GAVPFVWESHPGTPKVDASSPFA 63
Query: 78 VAGAVPAITPPPSYLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYRFKRIKIGFLAG 137
AG VPAITPPPSY LR R K IKIGF+A
Sbjct: 64 EAGGVPAITPPPSYHLRAAAAMSSSPQPHGRSGRRNVVNGRGKYCGYCRLKWIKIGFIAA 123
Query: 138 IFRRIALG 145
+FRR+ALG
Sbjct: 124 VFRRLALG 131
>Os01g0166500 Conserved hypothetical protein
Length = 246
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 5/72 (6%)
Query: 22 SPLRIKQDG-KFYERLLAKERSAASRSFRHYW-AAEPGSVPFVWESQPGTPKVDVSRMVA 79
S L++K G K + +LL++E +AA+ SFR Y+ A GSVPF+WESQPGTPK +S V
Sbjct: 15 SKLQLKPAGSKVFSKLLSRESAAAAPSFRVYYGVASAGSVPFLWESQPGTPKNAMSDAV- 73
Query: 80 GAVPAITPPPSY 91
+P +TPPPSY
Sbjct: 74 --LPPLTPPPSY 83
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,550,126
Number of extensions: 209520
Number of successful extensions: 606
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 4
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)