FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0166500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.43 (0.0736) R2 : 0.343
β1 : -4.46 (0.348) R2dD : 0.475 R2D : 0.034
β2 : 1.32 (0.206) R2dC : 0.0857 R2C : -0.0544
β3 : 1.09 (0.216) R2dE : 0.069 R2E : -0.177
β4 : -3.48 (0.785) R2dD*C : 0.0334 R2D*C : -0.0415
β5 : -6.05 (1.05) R2dD*E : 0.107 R2D*E : -0.3
γ1 : -1.77 (0.189) R2dN8 : 0.286 R2N8 : -0.0675
σ : 1.29
deviance : 750.87
__
_____
C
peak time of C : 8.36
E
wheather : temperature
threshold : 25
memory length : 307
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13
open length of G : 20

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
750.87 1.29 4.43 -4.46 1.32 1.09 -3.48 -6.05 -1.77 8.36 25 307 13 20
779.46 1.3 4.33 -3.2 1.2 0.883 -1.55 -- -1.36 9.09 24.1 205 12.4 19.6
782.38 1.3 4.45 -4.35 1.36 1.12 -- -4.68 -1.81 8.07 25.1 225 12.8 20.2
788.93 1.31 4.33 -3.21 1.22 0.876 -- -- -1.33 9.25 24.09 209 13.1 18.4
853.17 1.36 4.46 -4.49 -- 1.09 -- -4.99 -1.73 -- 24.66 1135 13.7 20.1
829.55 1.35 4.24 -2.9 0.782 -- -2 -- -0.951 9.02 -- -- -- --
842.71 1.36 4.24 -2.98 0.808 -- -- -- -0.955 8.49 -- -- -- --
839.84 1.35 4.29 -3.24 -- 0.762 -- -- -1.05 -- 20.5 22 15.6 22.3
1047.44 1.51 4.22 -- 1.34 0.727 -- -- -0.902 9.76 20.5 160 13.4 18.4
879.2 1.39 4.26 -2.97 -- -- -- -- -0.947 -- -- -- -- --
1076.22 1.53 4.17 -- 0.798 -- -- -- -0.624 8.77 -- -- -- --
1099.11 1.54 4.21 -- -- 0.482 -- -- -0.671 -- 20.6 2 16 22
1112.35 1.56 4.19 -- -- -- -- -- -0.617 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 742.77 wind 1 43200 > th dose dependent rect. 13 1
2 743.86 wind 1 43200 > th dose dependent rect. 12 3
3 743.93 wind 9 43200 < th dose dependent rect. 13 1
4 744.40 wind 9 43200 < th dose dependent rect. 12 3
9 745.87 wind 5 43200 > th dose independent rect. 14 2
18 746.52 wind 5 43200 < th dose independent rect. 13 3
56 749.74 wind 1 43200 < th dose dependent rect. 24 2
73 750.79 humidity 80 43200 < th dose independent rect. 21 1
89 751.61 wind 3 43200 > th dose independent rect. 9 6
104 752.01 humidity 80 43200 > th dose independent rect. 21 2
133 753.12 humidity 80 43200 < th dose independent rect. 20 5
135 753.15 humidity 90 43200 < th dose dependent rect. 4 1
140 753.27 wind 1 43200 < th dose dependent rect. 8 4
148 753.62 wind 1 43200 > th dose independent rect. 8 4
151 753.66 wind 3 43200 < th dose independent rect. 9 6
154 753.71 temperature 25 270 > th dose independent rect. 13 20
156 753.74 humidity 80 43200 > th dose independent rect. 20 9
158 753.76 humidity 80 43200 < th dose independent rect. 20 8
178 754.07 humidity 80 43200 > th dose independent rect. 20 4
194 754.45 humidity 80 43200 < th dose dependent rect. 20 9
221 754.77 radiation 40 43200 > th dose independent rect. 9 2
232 754.96 radiation 20 43200 > th dose independent rect. 8 2
233 754.99 temperature 25 270 > th dose independent rect. 13 11
244 755.30 radiation 10 43200 > th dose independent rect. 10 1
272 755.65 wind 1 43200 > th dose dependent sin 21 NA
285 755.82 wind 1 43200 < th dose independent rect. 24 2
296 755.92 wind 9 43200 < th dose dependent sin 21 NA
315 755.97 wind 3 43200 > th dose dependent rect. 12 15
316 756.00 wind 1 43200 < th dose independent rect. 8 4
416 756.81 radiation 20 43200 > th dose dependent rect. 9 1
444 757.05 wind 1 43200 < th dose dependent rect. 2 1
477 757.28 wind 5 43200 < th dose independent sin 19 NA
507 757.39 wind 1 43200 < th dose dependent rect. 11 1
517 757.51 radiation 40 43200 > th dose independent sin 9 NA
534 757.62 temperature 20 270 > th dose dependent rect. 13 18
536 757.64 radiation 40 43200 < th dose independent rect. 9 1
580 757.80 radiation 10 43200 < th dose dependent rect. 10 1
582 757.81 wind 1 43200 > th dose independent rect. 2 1
616 758.12 temperature 25 270 < th dose independent rect. 11 13
617 758.13 wind 1 43200 > th dose independent rect. 24 1
619 758.14 radiation 20 43200 > th dose independent sin 10 NA
670 758.47 radiation 20 43200 < th dose independent rect. 8 2
676 758.52 radiation 40 43200 < th dose dependent rect. 9 1
783 759.11 wind 5 43200 > th dose independent sin 19 NA
790 759.14 temperature 25 43200 > th dose dependent rect. 9 1
818 759.37 temperature 20 90 > th dose dependent sin 14 NA
828 759.46 radiation 40 43200 < th dose independent rect. 9 4
877 759.66 temperature 25 43200 > th dose dependent rect. 6 5
919 759.81 temperature 25 43200 > th dose dependent rect. 23 13