BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0166500 Os01g0166500|AK122083
(246 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0166500 Conserved hypothetical protein 201 5e-52
Os05g0165500 Conserved hypothetical protein 75 3e-14
Os05g0335500 Conserved hypothetical protein 67 1e-11
>Os01g0166500 Conserved hypothetical protein
Length = 246
Score = 201 bits (510), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 117/206 (56%), Positives = 117/206 (56%)
Query: 15 SKLQLKPAGSKVFSKLLSRESAAAAPSFRVYYGVASAGSVPFLWESQPGTPKNAMSDAVX 74
SKLQLKPAGSKVFSKLLSRESAAAAPSFRVYYGVASAGSVPFLWESQPGTPKNAMSDAV
Sbjct: 15 SKLQLKPAGSKVFSKLLSRESAAAAPSFRVYYGVASAGSVPFLWESQPGTPKNAMSDAVL 74
Query: 75 XXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXILRLFVLPKIRLRRGGRPVXXXXXXXXX 134
A ILRLFVLPKIRLRRGGRPV
Sbjct: 75 PPLTPPPSYYTAGKVSAGGGGGGGGRKYGKHGILRLFVLPKIRLRRGGRPVSGSPTSSCA 134
Query: 135 XXXXXXXXXXXXXXXXXXXXXXXXXPTCSSMRSLQXXXXXXXXXXXXXXXXXXXXXXXMA 194
PTCSSMRSLQ MA
Sbjct: 135 SSTSSSSSSASFYSSYSLSFRSTQSPTCSSMRSLQGHGGGGRAFGDDDDDDDDGGDDDMA 194
Query: 195 ASTACFRVRHESFRAIKNCRVAMTVR 220
ASTACFRVRHESFRAIKNCRVAMTVR
Sbjct: 195 ASTACFRVRHESFRAIKNCRVAMTVR 220
>Os05g0165500 Conserved hypothetical protein
Length = 227
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 48/56 (85%), Gaps = 5/56 (8%)
Query: 23 GSKVFSKLLSRESAA-----AAPSFRVYYGVASAGSVPFLWESQPGTPKNAMSDAV 73
GSK++S+++S+E+AA A PSFRVYYGVASAGSVPFLWESQPGTPK++ S AV
Sbjct: 15 GSKLYSRMMSKEAAAAAAPLAVPSFRVYYGVASAGSVPFLWESQPGTPKSSPSTAV 70
>Os05g0335500 Conserved hypothetical protein
Length = 224
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 36/44 (81%), Gaps = 3/44 (6%)
Query: 30 LLSRESAAAAPSFRVYYGVASAGSVPFLWESQPGTPKNAMSDAV 73
L S ++A + PSFRVYYGVASAGSVPFLWES PGTPKN DA+
Sbjct: 34 LHSPDAAVSNPSFRVYYGVASAGSVPFLWESAPGTPKN---DAI 74
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.130 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,721,657
Number of extensions: 81501
Number of successful extensions: 238
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 3
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)