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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0335500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.047) R2 : 0.0808
β1 : 0.767 (0.172) R2dD : 0.0415 R2D : 0.0464
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.358 (0.1) R2dN8 : 0.0344 R2N8 : 0.0393
σ : 0.882
deviance : 356.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
318.44 0.838 3.38 0.64 0.546 0.737 1.98 -2.43 -0.372 7.65 49.43 577 -- --
323.72 0.838 3.38 0.792 0.548 0.83 2.23 -- -0.361 7.39 53.34 582 -- --
328.51 0.844 3.38 0.651 0.562 0.667 -- -2.68 -0.402 7.29 47.05 604 -- --
335.58 0.853 3.38 0.893 0.473 1.16 -- -- -0.334 7.51 55.71 601 -- --
335.88 0.854 3.36 0.971 -- 0.951 -- -3.44 -0.282 -- 62.42 516 -- --
338.54 0.863 3.39 0.713 0.371 -- 1.91 -- -0.361 7.8 -- -- -- --
347.61 0.873 3.39 0.769 0.39 -- -- -- -0.36 9.36 -- -- -- --
336.35 0.854 3.38 1.01 -- 2.13 -- -- -0.284 -- 64.71 510 -- --
353.4 0.876 3.4 -- 0.379 1.52 -- -- -0.422 8.35 63.46 516 -- --
356.51 0.882 3.4 0.767 -- -- -- -- -0.358 -- -- -- -- --
363.2 0.891 3.41 -- 0.39 -- -- -- -0.445 9.21 -- -- -- --
361.29 0.885 3.41 -- -- 1.51 -- -- -0.409 -- 63.27 516 -- --
372.03 0.9 3.42 -- -- -- -- -- -0.443 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 308.21 temperature 30.0 270 < th dose dependent rect. 24 10
9 312.81 temperature 25.0 270 < th dose independent rect. 24 9
12 313.14 wind 3.0 10 < th dose dependent rect. 13 4
17 314.17 temperature 20.0 270 > th dose independent rect. 4 11
18 314.53 wind 3.0 10 < th dose dependent rect. 13 6
23 314.80 atmosphere 1005.0 270 < th dose dependent rect. 9 5
24 314.93 atmosphere 1005.0 270 < th dose dependent rect. 11 2
26 315.09 temperature 30.0 10 < th dose dependent rect. 2 9
63 316.34 precipitation 0.1 270 < th dose independent rect. 24 21
64 316.34 precipitation 0.1 270 < th dose dependent rect. 24 21
91 317.29 atmosphere 1000.0 90 > th dose independent rect. 1 20
98 317.40 atmosphere 1000.0 90 > th dose independent rect. 21 4
110 317.60 wind 9.0 43200 < th dose independent rect. 24 3
135 317.92 atmosphere 1000.0 90 > th dose independent rect. 23 1
138 317.94 wind 3.0 10 < th dose independent rect. 13 4
163 318.13 atmosphere 1005.0 90 < th dose dependent rect. 2 14
188 318.50 temperature 15.0 270 > th dose independent rect. 24 20
199 318.72 wind 9.0 4320 < th dose independent rect. 23 2
206 318.84 temperature 15.0 270 > th dose independent rect. 20 4
210 318.85 wind 9.0 270 < th dose independent rect. 24 20
229 319.05 temperature 30.0 270 < th dose independent rect. 20 4
230 319.05 humidity 50.0 270 > th dose independent rect. 20 4
234 319.05 radiation 1.0 270 < th dose independent rect. 20 4
240 319.05 atmosphere 1015.0 270 < th dose independent rect. 24 20
241 319.05 radiation 1.0 270 < th dose dependent rect. 20 4
248 319.07 wind 9.0 270 < th dose independent rect. 20 4
264 319.19 wind 1.0 270 > th dose independent rect. 20 4
265 319.19 radiation 30.0 270 < th dose independent rect. 10 14
274 319.30 atmosphere 1005.0 90 < th dose dependent sin 0 NA
277 319.32 atmosphere 1000.0 10 > th dose independent rect. 21 4
278 319.32 precipitation 0.1 270 < th dose independent rect. 20 4
279 319.32 precipitation 0.1 270 < th dose dependent rect. 20 4
283 319.34 atmosphere 1000.0 90 > th dose independent rect. 1 10
298 319.45 temperature 30.0 270 < th dose dependent rect. 24 19
304 319.52 temperature 30.0 90 < th dose dependent rect. 21 4
333 319.60 radiation 40.0 720 < th dose independent rect. 11 22
355 319.74 wind 1.0 90 > th dose independent rect. 6 11
360 319.75 temperature 10.0 270 > th dose dependent rect. 20 13
370 319.83 atmosphere 995.0 4320 > th dose independent rect. 2 9
374 319.83 atmosphere 995.0 90 > th dose dependent rect. 1 20
391 319.90 temperature 10.0 270 > th dose dependent rect. 20 15
398 319.95 atmosphere 1000.0 10 > th dose independent rect. 1 20
406 319.99 temperature 30.0 270 < th dose dependent rect. 21 2
417 320.02 atmosphere 1000.0 10 > th dose independent rect. 3 18
430 320.06 radiation 40.0 270 < th dose independent rect. 4 22
434 320.07 temperature 30.0 270 < th dose dependent rect. 24 17
446 320.11 atmosphere 995.0 270 > th dose dependent rect. 20 4
477 320.17 temperature 30.0 90 < th dose dependent rect. 23 2
496 320.24 humidity 50.0 270 > th dose dependent rect. 20 4
501 320.25 radiation 40.0 270 < th dose independent rect. 20 15
548 320.44 atmosphere 995.0 10 > th dose dependent rect. 2 19
635 320.72 radiation 30.0 720 < th dose independent rect. 4 20
638 320.72 wind 5.0 10 < th dose dependent rect. 3 14
645 320.75 radiation 20.0 43200 < th dose dependent rect. 24 1
646 320.75 radiation 10.0 720 > th dose dependent rect. 10 2
675 320.81 humidity 70.0 14400 > th dose independent rect. 22 6
691 320.83 temperature 15.0 90 > th dose independent rect. 3 18
710 320.87 precipitation 0.1 270 < th dose independent rect. 9 11
711 320.87 precipitation 0.1 270 < th dose dependent rect. 9 11
731 320.89 radiation 20.0 43200 < th dose dependent rect. 24 3
773 320.94 radiation 10.0 270 < th dose independent rect. 24 8
789 320.98 radiation 20.0 90 < th dose independent rect. 7 19
797 320.99 radiation 40.0 90 < th dose dependent rect. 7 19
816 321.03 atmosphere 995.0 90 > th dose dependent rect. 23 1
818 321.04 atmosphere 995.0 4320 > th dose independent rect. 4 3
834 321.07 temperature 30.0 10 < th dose dependent rect. 23 2
835 321.08 atmosphere 995.0 4320 > th dose independent rect. 2 6
846 321.12 wind 9.0 30 < th dose independent rect. 24 23
860 321.16 radiation 30.0 270 < th dose independent rect. 20 19
862 321.17 humidity 70.0 720 < th dose independent rect. 11 1
891 321.22 atmosphere 995.0 10 > th dose dependent rect. 1 22
902 321.27 radiation 30.0 720 < th dose independent rect. 11 5
903 321.27 wind 9.0 10 < th dose independent rect. 2 21
910 321.30 wind 9.0 90 < th dose independent rect. 23 1
911 321.30 temperature 10.0 90 > th dose independent rect. 23 1
912 321.30 temperature 30.0 90 < th dose independent rect. 23 1
913 321.30 humidity 50.0 90 > th dose independent rect. 23 1
917 321.30 radiation 1.0 90 < th dose independent rect. 23 1
925 321.30 radiation 1.0 90 < th dose dependent rect. 23 1
950 321.32 radiation 40.0 270 < th dose independent rect. 20 13
968 321.34 precipitation 0.1 90 < th dose independent rect. 23 1
970 321.34 precipitation 0.1 90 < th dose dependent rect. 23 1
979 321.36 atmosphere 1015.0 10 < th dose independent rect. 24 23
984 321.38 wind 1.0 90 < th dose independent rect. 12 9
989 321.40 wind 7.0 10 < th dose independent rect. 23 3
991 321.40 temperature 10.0 10 > th dose independent rect. 23 3
992 321.40 temperature 30.0 10 < th dose independent rect. 23 3
993 321.40 humidity 50.0 10 > th dose independent rect. 23 3
997 321.40 radiation 1.0 10 < th dose independent rect. 23 3