Os05g0476000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0476000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.3 | 0.721 | 4 | -0.344 | 0.242 | 0.684 | 0.194 | 1.67 | -0.254 | 6.81 | 49.52 | 4530 | -- | -- |
| 235.4 | 0.715 | 4.03 | -0.438 | 0.261 | 1.46 | 0.307 | -- | -0.23 | 6.79 | 49.79 | 4814 | -- | -- |
| 235.39 | 0.715 | 4 | -0.34 | 0.243 | 0.672 | -- | 1.65 | -0.255 | 6.69 | 49.49 | 4519 | -- | -- |
| 235.64 | 0.715 | 4.03 | -0.432 | 0.256 | 1.45 | -- | -- | -0.234 | 6.8 | 49.72 | 4814 | -- | -- |
| 238.46 | 0.719 | 4 | -0.338 | -- | 0.703 | -- | 1.56 | -0.247 | -- | 49.84 | 4516 | -- | -- |
| 253.21 | 0.746 | 4.05 | -0.0658 | 0.236 | -- | 0.0993 | -- | -0.324 | 6.36 | -- | -- | -- | -- |
| 253.23 | 0.745 | 4.05 | -0.0647 | 0.236 | -- | -- | -- | -0.324 | 6.32 | -- | -- | -- | -- |
| 239.07 | 0.72 | 4.03 | -0.42 | -- | 1.42 | -- | -- | -0.23 | -- | 49.61 | 4812 | -- | -- |
| 239.82 | 0.721 | 4.01 | -- | 0.247 | 1.23 | -- | -- | -0.192 | 6.84 | 50 | 4859 | -- | -- |
| 256.14 | 0.748 | 4.05 | -0.0584 | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
| 253.35 | 0.745 | 4.05 | -- | 0.235 | -- | -- | -- | -0.317 | 6.33 | -- | -- | -- | -- |
| 242.94 | 0.726 | 4.03 | -- | -- | 1.14 | -- | -- | -0.209 | -- | 49.16 | 4814 | -- | -- |
| 256.23 | 0.747 | 4.05 | -- | -- | -- | -- | -- | -0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 232.60 | wind | 9 | 90 | > th | dose independent | rect. | 17 | 9 |
| 10 | 232.74 | wind | 9 | 90 | > th | dose independent | rect. | 17 | 6 |
| 15 | 232.96 | wind | 9 | 90 | > th | dose independent | rect. | 17 | 2 |
| 18 | 233.63 | wind | 9 | 10 | > th | dose independent | rect. | 17 | 1 |
| 22 | 233.93 | wind | 9 | 90 | > th | dose dependent | rect. | 17 | 9 |
| 31 | 234.06 | wind | 9 | 90 | > th | dose dependent | rect. | 17 | 6 |
| 36 | 234.32 | wind | 9 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 39 | 234.59 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 9 | 5 |
| 41 | 234.64 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 44 | 234.72 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 47 | 234.76 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 63 | 234.96 | humidity | 50 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 66 | 235.00 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 71 | 235.05 | humidity | 50 | 4320 | < th | dose independent | sin | 15 | NA |
| 85 | 235.10 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 101 | 235.20 | humidity | 50 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 121 | 235.24 | wind | 7 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 122 | 235.24 | wind | 7 | 10 | > th | dose dependent | rect. | 16 | 2 |
| 124 | 235.25 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 134 | 235.27 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 9 | 8 |
| 154 | 235.30 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 9 | 8 |
| 224 | 235.59 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 23 | NA |
| 225 | 235.60 | humidity | 50 | 4320 | > th | dose independent | sin | 14 | NA |
| 283 | 235.72 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 23 | NA |
| 292 | 235.75 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 23 | NA |
| 319 | 235.82 | humidity | 50 | 4320 | < th | dose dependent | sin | 12 | NA |
| 351 | 235.92 | wind | 9 | 14400 | < th | dose independent | sin | 5 | NA |
| 366 | 235.98 | wind | 9 | 90 | > th | dose independent | sin | 14 | NA |
| 370 | 235.99 | wind | 7 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 381 | 236.03 | wind | 9 | 90 | > th | dose independent | sin | 12 | NA |
| 387 | 236.04 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 12 |
| 389 | 236.04 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 16 |
| 392 | 236.05 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 20 |
| 400 | 236.06 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 404 | 236.07 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 412 | 236.08 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 457 | 236.21 | humidity | 60 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 570 | 236.39 | humidity | 50 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 659 | 236.56 | wind | 7 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 676 | 236.58 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 704 | 236.61 | humidity | 50 | 4320 | < th | dose independent | no | NA | NA |
| 880 | 236.71 | wind | 7 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 893 | 236.73 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 927 | 236.79 | wind | 9 | 14400 | > th | dose independent | sin | 5 | NA |
| 987 | 236.84 | atmosphere | 1015 | 4320 | > th | dose dependent | no | NA | NA |