BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0819700 Os01g0819700|AK106919
         (467 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0819700  Helix-turn-helix, Fis-type domain containing p...   656   0.0  
AK109356                                                          488   e-138
Os05g0479900  Conserved hypothetical protein                      137   2e-32
Os06g0184600  Hypothetical protein                                 96   8e-20

>Os01g0819700 Helix-turn-helix, Fis-type domain containing protein
          Length = 467

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/467 (73%), Positives = 343/467 (73%)

Query: 1   MESEQVKRRFGRCPYCRAMIYQDPNAIIYYCSKCRTPIRGKNPEPTDDAEYALSQLEILS 60
           MESEQVKRRFGRCPYCRAMIYQDPNAIIYYCSKCRTPIRGKNPEPTDDAEYALSQLEILS
Sbjct: 1   MESEQVKRRFGRCPYCRAMIYQDPNAIIYYCSKCRTPIRGKNPEPTDDAEYALSQLEILS 60

Query: 61  ADTASVFSDDPDTLSRTSSVAYGGGEQPPVRTSSAPYAAFDRGSVXXXXXXXXXXXXXXX 120
           ADTASVFSDDPDTLSRTSSVAYGGGEQPPVRTSSAPYAAFDRGSV               
Sbjct: 61  ADTASVFSDDPDTLSRTSSVAYGGGEQPPVRTSSAPYAAFDRGSVRAGSRSGEQSGEERG 120

Query: 121 XXPMHSRVSELXXXXXXXXXXXXGDMGAFRDDGSSYGSDNDVPTXXXXXXXXXXXPLTSQ 180
             PMHSRVSEL            GDMGAFRDDGSSYGSDNDVPT           PLTSQ
Sbjct: 121 GSPMHSRVSELRPTSRRTRRPMSGDMGAFRDDGSSYGSDNDVPTSAAASYRRRASPLTSQ 180

Query: 181 ELEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARSPLTDPAFQRDLLQALDNLRRVI 240
           ELEA                              AARSPLTDPAFQRDLLQALDNLRRVI
Sbjct: 181 ELEASSSSMGSSGYQPSGVSSSSMGSSSVYEPSGAARSPLTDPAFQRDLLQALDNLRRVI 240

Query: 241 AAVEQPYGVDAHLQQAGMPPKSASCNDXXXXXXXXXXXXXXXXVTRRNSRLMRRLESQLV 300
           AAVEQPYGVDAHLQQAGMPPKSASCND                VTRRNSRLMRRLESQLV
Sbjct: 241 AAVEQPYGVDAHLQQAGMPPKSASCNDAATGGSGGGGGAYAAAVTRRNSRLMRRLESQLV 300

Query: 301 QALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHHCRAVLGGTPFVVCDKCSEILQL 360
           QALP                               KHHCRAVLGGTPFVVCDKCSEILQL
Sbjct: 301 QALPRDGLRRDRSTSSSSSASSSRPGGDRARAAGRKHHCRAVLGGTPFVVCDKCSEILQL 360

Query: 361 PAAVSANRAARLECGGCGETLSIKLPXXXXXXXSGSTDRPKKIFSAPQPAVRRLDDDDAG 420
           PAAVSANRAARLECGGCGETLSIKLP       SGSTDRPKKIFSAPQPAVRRLDDDDAG
Sbjct: 361 PAAVSANRAARLECGGCGETLSIKLPAAAAAAASGSTDRPKKIFSAPQPAVRRLDDDDAG 420

Query: 421 EEHASARSNLSGDQRWPASPAEGPLHRMLGYSTVSSVFRSRRYGEQH 467
           EEHASARSNLSGDQRWPASPAEGPLHRMLGYSTVSSVFRSRRYGEQH
Sbjct: 421 EEHASARSNLSGDQRWPASPAEGPLHRMLGYSTVSSVFRSRRYGEQH 467



>AK109356 
          Length = 382

 Score =  488 bits (1255), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/376 (68%), Positives = 259/376 (68%)

Query: 1   MESEQVKRRFGRCPYCRAMIYQDPNAIIYYCSKCRTPIRGKNPEPTDDAEYALSQLEILS 60
           MESEQVKRRFGRCPYCRAMIYQDPNAIIYYCSKCRTPIRGKNPEPTDDAEYALSQLEILS
Sbjct: 1   MESEQVKRRFGRCPYCRAMIYQDPNAIIYYCSKCRTPIRGKNPEPTDDAEYALSQLEILS 60

Query: 61  ADTASVFSDDPDTLSRTSSVAYGGGEQPPVRTSSAPYAAFDRGSVXXXXXXXXXXXXXXX 120
           ADTASVFSDDPDTLSRTSSVAYGGGEQPPVRTSSAPYAAFDRGSV               
Sbjct: 61  ADTASVFSDDPDTLSRTSSVAYGGGEQPPVRTSSAPYAAFDRGSVRAGSRSGEQSGEERG 120

Query: 121 XXPMHSRVSELXXXXXXXXXXXXGDMGAFRDDGSSYGSDNDVPTXXXXXXXXXXXPLTSQ 180
             PMHSRVSEL            GDMGAFRDDGSSYGSDNDVPT           PLTSQ
Sbjct: 121 GSPMHSRVSELRPTSRRTRRPMSGDMGAFRDDGSSYGSDNDVPTSAAASYRRRASPLTSQ 180

Query: 181 ELEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARSPLTDPAFQRDLLQALDNLRRVI 240
           ELEA                              AARSPLTDPAFQRDLLQALDNLRRVI
Sbjct: 181 ELEASSSSMGSSGYQPSGVSSSSMGSSSVYEPSGAARSPLTDPAFQRDLLQALDNLRRVI 240

Query: 241 AAVEQPYGVDAHLQQAGMPPKSASCNDXXXXXXXXXXXXXXXXVTRRNSRLMRRLESQLV 300
           AAVEQPYGVDAHLQQAGMPPKSASCND                VTRRNSRLMRRLESQLV
Sbjct: 241 AAVEQPYGVDAHLQQAGMPPKSASCNDAATGGSGGGGGAYAAAVTRRNSRLMRRLESQLV 300

Query: 301 QALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHHCRAVLGGTPFVVCDKCSEILQL 360
           QALP                               KHHCRAVLGGTPFVVCDKCSEILQL
Sbjct: 301 QALPRDGLRRDRSTSSSSSASSSRPGGDRARAAGRKHHCRAVLGGTPFVVCDKCSEILQL 360

Query: 361 PAAVSANRAARLECGG 376
           PAAVSANRAARLECGG
Sbjct: 361 PAAVSANRAARLECGG 376



>Os05g0479900 Conserved hypothetical protein
          Length = 332

 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 70/72 (97%)

Query: 1  MESEQVKRRFGRCPYCRAMIYQDPNAIIYYCSKCRTPIRGKNPEPTDDAEYALSQLEILS 60
          M+SE+VK RFGRCPYCRAMIYQ+P A+I+YCS+CRTPIRGKNPEPTD+AEYALS+LEILS
Sbjct: 1  MQSEEVKMRFGRCPYCRAMIYQNPKAVIFYCSRCRTPIRGKNPEPTDEAEYALSRLEILS 60

Query: 61 ADTASVFSDDPD 72
          ADTASVFSD+P+
Sbjct: 61 ADTASVFSDEPE 72




 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 83/205 (40%), Gaps = 40/205 (19%)

Query: 220 LTDPAFQRDLLQALDNLRRVIAAVEQPYGVDAHLQQAGMPPKSASCNDXXXXXXXXXXXX 279
           L DPAF ++LL ALDNLR +I  +EQP        +A                       
Sbjct: 159 LMDPAFHKELLHALDNLRSLIVTIEQPRPASGGGGRA----------------------- 195

Query: 280 XXXXVTRRNSRLMRRLESQLVQALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHHC 339
               +TRR+SRL RRLESQL +ALP                                  C
Sbjct: 196 ----LTRRDSRLFRRLESQLERALPPQDTASTSASSSSCRGDGGGGRPSAPARREGTDPC 251

Query: 340 RAVLGGTPFVVCDKCSEIL---QLPAAVSANRAARLECGGCGETLSIKLPXXXXXXXSGS 396
           R VLGG PFV+C KCSE+L     P         R+ CG C E L + LP         +
Sbjct: 252 RPVLGGAPFVICGKCSELLRTPPPPRPRRRRWTTRIRCGECNEVLELSLPAGGVP----A 307

Query: 397 TDRPKKIFSAP------QPAVRRLD 415
             RP +  SAP      +P  RRL+
Sbjct: 308 QHRPIRTCSAPLVSDHHRPLPRRLE 332



>Os06g0184600 Hypothetical protein
          Length = 105

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 53/96 (55%)

Query: 88  PPVRTSSAPYAAFDRGSVXXXXXXXXXXXXXXXXXPMHSRVSELXXXXXXXXXXXXGDMG 147
           PPVRTSSAPY AFDRGS+                 PMHSR+SEL            GDMG
Sbjct: 1   PPVRTSSAPYTAFDRGSIRTGSRSGEQSGEERGGSPMHSRISELRPMSRITRRPMSGDMG 60

Query: 148 AFRDDGSSYGSDNDVPTXXXXXXXXXXXPLTSQELE 183
            FRDDGSSYG DNDVPT           PL+SQELE
Sbjct: 61  VFRDDGSSYGLDNDVPTSAAASYRRRASPLSSQELE 96



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,839,734
Number of extensions: 463330
Number of successful extensions: 1332
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1326
Number of HSP's successfully gapped: 5
Length of query: 467
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 363
Effective length of database: 11,605,545
Effective search space: 4212812835
Effective search space used: 4212812835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)