Os01g0819700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-turn-helix, Fis-type domain containing protein.
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Os01g0819700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-turn-helix, Fis-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.71 | 0.633 | 7.93 | 0.161 | 0.725 | -1.13 | 0.151 | 2.27 | 0.0354 | 6.55 | 1000 | 60 | -- | -- |
| 181.77 | 0.628 | 7.95 | 0.022 | 0.732 | -0.734 | 0.176 | -- | 0.0379 | 6.58 | 999.8 | 60 | -- | -- |
| 181.77 | 0.628 | 7.93 | 0.166 | 0.725 | -1.14 | -- | 2.32 | 0.0348 | 6.52 | 1000 | 60 | -- | -- |
| 181.82 | 0.628 | 7.95 | 0.0136 | 0.726 | -0.728 | -- | -- | 0.0341 | 6.53 | 999.9 | 60 | -- | -- |
| 209.15 | 0.674 | 7.94 | 0.192 | -- | -1.16 | -- | 2.41 | 0.0483 | -- | 1000 | 60 | -- | -- |
| 195.97 | 0.656 | 7.94 | -0.116 | 0.731 | -- | 0.158 | -- | 0.0831 | 6.49 | -- | -- | -- | -- |
| 196.03 | 0.656 | 7.94 | -0.114 | 0.732 | -- | -- | -- | 0.0825 | 6.46 | -- | -- | -- | -- |
| 209.26 | 0.674 | 7.97 | 0.0341 | -- | -0.739 | -- | -- | 0.0494 | -- | 999.8 | 60 | -- | -- |
| 181.82 | 0.628 | 7.95 | -- | 0.726 | -0.727 | -- | -- | 0.0344 | 6.53 | 999.9 | 60 | -- | -- |
| 223.86 | 0.699 | 7.96 | -0.0953 | -- | -- | -- | -- | 0.0979 | -- | -- | -- | -- | -- |
| 196.37 | 0.656 | 7.94 | -- | 0.73 | -- | -- | -- | 0.0952 | 6.47 | -- | -- | -- | -- |
| 209.29 | 0.674 | 7.97 | -- | -- | -0.733 | -- | -- | 0.0461 | -- | 999.8 | 60 | -- | -- |
| 224.1 | 0.699 | 7.96 | -- | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 175.04 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 6 | 17 |
| 3 | 176.11 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 15 | 23 |
| 8 | 177.41 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 15 | 21 |
| 10 | 178.30 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 17 | 19 |
| 15 | 178.83 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 22 |
| 16 | 178.93 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 21 | 179.04 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 40 | 179.58 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 17 | 21 |
| 43 | 179.63 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 52 | 179.79 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 20 |
| 53 | 179.82 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 77 | 180.05 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 18 | 20 |
| 105 | 180.36 | humidity | 90.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 119 | 180.55 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 125 | 180.64 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 140 | 180.83 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 172 | 181.10 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 1 | 23 |
| 232 | 181.55 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 235 | 181.55 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 249 | 181.66 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 23 |
| 252 | 181.66 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 266 | 181.82 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 271 | 181.84 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 300 | 181.96 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 9 | 19 |
| 304 | 181.97 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 2 | 23 |
| 309 | 181.99 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 11 | 23 |
| 312 | 182.00 | atmosphere | 1000.0 | 30 | < th | dose independent | no | NA | NA |
| 314 | 182.00 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 324 | 182.02 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 325 | 182.03 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 326 | 182.03 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 336 | 182.06 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 347 | 182.09 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 359 | 182.14 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 361 | 182.15 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 2 | 21 |
| 364 | 182.16 | atmosphere | 1000.0 | 10 | > th | dose independent | no | NA | NA |
| 405 | 182.30 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 413 | 182.36 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 17 | 15 |
| 414 | 182.36 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 429 | 182.48 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 14 |
| 435 | 182.50 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 459 | 182.64 | wind | 7.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 461 | 182.65 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 473 | 182.71 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 7 |
| 482 | 182.73 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 8 | 22 |
| 491 | 182.76 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 17 | 17 |
| 529 | 182.86 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 15 | 18 |
| 530 | 182.86 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 537 | 182.88 | wind | 7.0 | 10 | < th | dose independent | rect. | 12 | 17 |
| 545 | 182.90 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 13 |
| 586 | 183.03 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 16 | 16 |
| 605 | 183.07 | humidity | 80.0 | 270 | > th | dose independent | rect. | 15 | 18 |
| 606 | 183.07 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 629 | 183.11 | humidity | 90.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 661 | 183.24 | temperature | 25.0 | 90 | > th | dose independent | rect. | 10 | 10 |
| 682 | 183.28 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 726 | 183.39 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 18 | 21 |
| 737 | 183.44 | atmosphere | 1000.0 | 30 | > th | dose independent | sin | 18 | NA |
| 772 | 183.53 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 781 | 183.55 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 14 |
| 801 | 183.59 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 816 | 183.63 | atmosphere | 995.0 | 4320 | < th | dose dependent | sin | 5 | NA |
| 819 | 183.64 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 824 | 183.65 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 12 |
| 833 | 183.67 | humidity | 90.0 | 270 | > th | dose independent | sin | 23 | NA |
| 854 | 183.72 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 16 | 10 |
| 870 | 183.75 | temperature | 25.0 | 270 | > th | dose independent | sin | 1 | NA |
| 876 | 183.76 | atmosphere | 1000.0 | 30 | < th | dose independent | sin | 17 | NA |
| 905 | 183.82 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 910 | 183.83 | atmosphere | 1010.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 947 | 183.90 | temperature | 25.0 | 270 | > th | dose independent | rect. | 10 | 1 |
| 965 | 183.94 | atmosphere | 1005.0 | 720 | < th | dose dependent | rect. | 17 | 3 |