BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0819700 Os01g0819700|AK106919
         (467 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05190.1  | chr5:1541853-1543875 FORWARD LENGTH=616             56   5e-08

>AT5G05190.1 | chr5:1541853-1543875 FORWARD LENGTH=616
          Length = 615

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 336 KHHCRAVLGGTPFVVCDKCSEILQLPA--AVSANRAARLECGGCGETLSIKLPXXXXXXX 393
           K H R   GG PFV C  CSE LQLP    +   +   L CG C   L   L        
Sbjct: 487 KRHVRPTAGGAPFVSCYSCSENLQLPVDFLIFKRKHHLLRCGTCTTVLRFSLQSRNHLVP 546

Query: 394 SGSTDRPKKIFSAPQPAVRRLDDDDAGEEHASARSNLSGDQRWPASPAEGPLHRMLGYST 453
           + + D      S    +      D A  +    RS++  D+  P +    PLHR++GYST
Sbjct: 547 AVTHDINANRNSN---STSESPIDKAPSKPEKLRSSVQ-DEELPVARG-SPLHRLMGYST 601

Query: 454 VSSVFR 459
           VS VF+
Sbjct: 602 VSQVFK 607



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,512,061
Number of extensions: 250353
Number of successful extensions: 623
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 625
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 365
Effective length of database: 8,310,137
Effective search space: 3033200005
Effective search space used: 3033200005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)