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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0184600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.23 (0.0543) R2 : 0.178
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.1 (0.131) R2dC : 0.128 R2C : 0.13
β3 : 1.45 (0.308) R2dE : 0.0459 R2E : 0.0313
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.347 (0.12) R2dN8 : 0.0223 R2N8 : -0.00398
σ : 1
deviance : 461.43
__
_____
C
peak time of C : 21.6
E
wheather : atmosphere
threshold : 1038
memory length : 3
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
440.85 0.987 5.19 0.705 1.11 -0.259 -1.38 8.66 0.224 21.7 1004 75 -- --
448.13 0.994 5.22 0.413 1.08 1.39 -1.44 -- 0.386 21.9 1026 6 -- --
446.6 0.992 5.17 0.857 1.12 -0.659 -- 11.2 0.233 21.4 1003 35 -- --
455.6 0.994 5.22 0.472 1.1 1.39 -- -- 0.39 21.5 1030 3 -- --
519.49 1.07 5.13 0.928 -- -0.951 -- 12.9 0.221 -- 1003 35 -- --
468.55 1.01 5.26 0.488 1.12 -- -1.44 -- 0.202 21.7 -- -- -- --
475.85 1.02 5.26 0.546 1.14 -- -- -- 0.207 21.4 -- -- -- --
527 1.07 5.18 0.473 -- 1.52 -- -- 0.405 -- 1034 3 -- --
461.43 1 5.23 -- 1.1 1.45 -- -- 0.347 21.6 1038 3 -- --
551.47 1.1 5.23 0.552 -- -- -- -- 0.203 -- -- -- -- --
483.72 1.03 5.27 -- 1.14 -- -- -- 0.146 21.4 -- -- -- --
532.87 1.08 5.19 -- -- 1.58 -- -- 0.361 -- 1038 4 -- --
559.52 1.1 5.24 -- -- -- -- -- 0.142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 430.01 temperature 10 720 > th dose dependent rect. 4 7
3 430.33 temperature 25 720 > th dose independent rect. 8 3
4 430.37 temperature 20 720 > th dose dependent rect. 8 1
5 430.38 temperature 20 720 < th dose independent rect. 2 5
8 430.71 wind 3 90 < th dose dependent rect. 3 12
11 430.93 temperature 25 270 < th dose independent rect. 1 11
14 431.28 wind 1 90 > th dose independent sin 1 NA
15 431.49 temperature 25 720 < th dose dependent rect. 8 2
17 431.60 wind 1 90 < th dose dependent sin 1 NA
18 431.62 temperature 30 720 < th dose dependent rect. 1 10
26 431.90 atmosphere 1015 270 < th dose dependent rect. 6 19
42 432.49 temperature 25 720 > th dose independent rect. 8 1
46 432.58 atmosphere 1000 30 > th dose independent rect. 23 23
53 432.83 temperature 10 720 > th dose dependent rect. 23 12
58 432.97 temperature 20 720 > th dose dependent rect. 8 3
95 433.83 temperature 20 720 < th dose independent rect. 2 1
109 433.94 temperature 25 720 > th dose independent rect. 1 10
121 434.18 wind 1 90 < th dose independent rect. 4 9
132 434.26 humidity 90 4320 > th dose dependent rect. 4 3
144 434.33 temperature 25 720 < th dose dependent rect. 3 4
150 434.43 wind 3 43200 < th dose dependent rect. 10 1
152 434.49 temperature 20 720 > th dose independent rect. 24 7
160 434.58 wind 1 90 < th dose independent rect. 4 13
164 434.61 temperature 20 720 < th dose independent rect. 5 2
178 434.67 humidity 80 14400 > th dose independent rect. 20 11
197 434.90 atmosphere 1000 30 > th dose independent rect. 20 23
207 434.99 atmosphere 1010 10 < th dose dependent rect. 8 18
228 435.19 humidity 80 14400 < th dose independent rect. 20 11
241 435.32 wind 1 90 < th dose independent sin 2 NA
281 435.64 temperature 25 720 < th dose dependent rect. 3 2
291 435.73 wind 9 14400 < th dose independent rect. 13 4
294 435.75 temperature 25 270 < th dose independent sin 4 NA
317 435.89 wind 7 4320 > th dose independent rect. 15 1
339 436.12 wind 9 14400 > th dose independent rect. 13 4
345 436.17 wind 9 14400 > th dose dependent rect. 18 22
349 436.19 wind 9 14400 > th dose dependent rect. 13 6
355 436.23 humidity 80 14400 < th dose dependent rect. 20 11
370 436.27 humidity 80 14400 < th dose dependent rect. 1 1
405 436.45 atmosphere 1015 10 < th dose dependent rect. 6 23
408 436.48 wind 9 14400 > th dose independent rect. 13 6
435 436.62 temperature 25 270 > th dose independent sin 3 NA
436 436.62 humidity 80 14400 < th dose independent rect. 22 2
500 436.93 temperature 25 270 < th dose independent rect. 9 2
515 436.98 humidity 80 14400 < th dose dependent rect. 21 5
516 436.98 wind 9 14400 > th dose dependent rect. 18 20
519 436.99 temperature 10 720 > th dose dependent rect. 23 16
530 437.05 wind 9 14400 > th dose dependent rect. 3 16
557 437.13 humidity 80 14400 < th dose independent rect. 21 5
562 437.15 wind 9 14400 > th dose dependent sin 1 NA
578 437.19 humidity 80 14400 < th dose dependent rect. 4 1
594 437.28 wind 7 4320 < th dose independent rect. 15 1
605 437.32 temperature 10 720 > th dose dependent sin 5 NA
608 437.33 humidity 90 4320 > th dose dependent rect. 1 6
618 437.37 atmosphere 1015 10 < th dose dependent rect. 6 20
625 437.40 wind 9 14400 > th dose dependent rect. 12 3
658 437.53 radiation 10 720 > th dose independent rect. 11 1
678 437.59 wind 9 14400 > th dose dependent rect. 20 20
706 437.68 humidity 80 14400 > th dose independent rect. 22 4
723 437.74 wind 9 14400 > th dose independent rect. 18 22
725 437.75 wind 9 14400 > th dose dependent rect. 9 10
733 437.77 wind 9 14400 < th dose independent rect. 1 15
739 437.78 atmosphere 1005 10 < th dose dependent rect. 9 13
742 437.79 wind 9 14400 > th dose independent rect. 3 16
746 437.80 wind 9 14400 < th dose independent rect. 3 13
778 437.88 wind 7 14400 > th dose dependent rect. 13 1
779 437.89 temperature 30 720 < th dose dependent sin 6 NA
784 437.90 wind 9 14400 < th dose independent rect. 23 17
790 437.92 wind 9 14400 > th dose dependent rect. 1 14
806 437.95 wind 9 14400 > th dose independent rect. 1 15
807 437.95 wind 9 14400 > th dose dependent rect. 3 12
827 437.98 wind 7 14400 > th dose dependent rect. 15 1
831 437.99 wind 9 14400 > th dose independent rect. 3 13
837 438.01 wind 9 14400 > th dose independent sin 0 NA
866 438.08 wind 1 14400 < th dose independent rect. 9 4
992 438.37 wind 9 14400 > th dose independent rect. 20 20