BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0816600 Os01g0816600|J100065N05
(59 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0816600 Leucine-rich repeat, plant specific containing... 118 8e-28
Os05g0486100 Protein kinase-like domain containing protein 80 4e-16
Os12g0210400 Protein kinase-like domain containing protein 77 3e-15
AK066155 76 5e-15
Os10g0145700 Leucine-rich repeat, plant specific containing... 70 4e-13
>Os01g0816600 Leucine-rich repeat, plant specific containing protein
Length = 59
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 1 MLSCRALNSNKFTGGIPPTLGLLSKLFWLDLSDNQLSGKIPVSSGSNPGLDQLVNAEHL 59
MLSCRALNSNKFTGGIPPTLGLLSKLFWLDLSDNQLSGKIPVSSGSNPGLDQLVNAEHL
Sbjct: 1 MLSCRALNSNKFTGGIPPTLGLLSKLFWLDLSDNQLSGKIPVSSGSNPGLDQLVNAEHL 59
>Os05g0486100 Protein kinase-like domain containing protein
Length = 969
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 46/54 (85%)
Query: 6 ALNSNKFTGGIPPTLGLLSKLFWLDLSDNQLSGKIPVSSGSNPGLDQLVNAEHL 59
ALNSNKF+GGIP ++G+L+ L WLDL+DNQL+G +P+S+ ++PGLDQLV +H
Sbjct: 144 ALNSNKFSGGIPSSIGVLTNLLWLDLADNQLTGSVPISTSTSPGLDQLVKTQHF 197
>Os12g0210400 Protein kinase-like domain containing protein
Length = 967
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 45/54 (83%)
Query: 6 ALNSNKFTGGIPPTLGLLSKLFWLDLSDNQLSGKIPVSSGSNPGLDQLVNAEHL 59
+LNSNKFTG IPP+LG LSKL+W DL+DNQL+G +P+S+ ++PGLD L + +H
Sbjct: 144 SLNSNKFTGSIPPSLGGLSKLYWFDLADNQLTGGLPISNATSPGLDNLTSTKHF 197
>AK066155
Length = 522
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 45/54 (83%)
Query: 6 ALNSNKFTGGIPPTLGLLSKLFWLDLSDNQLSGKIPVSSGSNPGLDQLVNAEHL 59
+LNSNKFTG IPP+LG LSKL+W DL+DNQL+G +P+S+ ++PGLD L + +H
Sbjct: 144 SLNSNKFTGSIPPSLGGLSKLYWFDLADNQLTGGLPISNATSPGLDNLTSTKHF 197
>Os10g0145700 Leucine-rich repeat, plant specific containing protein
Length = 309
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 6 ALNSNKFTGGIPPTLGLLSKLFWLDLSDNQLSGKIPVSSGSNPGLDQLVNAEHL 59
+LNSNKF G IPP+L LSKL+W DLSDNQL+G +P+S+ ++ GLD L N +H
Sbjct: 130 SLNSNKFNGSIPPSLCCLSKLYWFDLSDNQLTGGLPISNWTSLGLDNLTNTKHF 183
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,321,507
Number of extensions: 75689
Number of successful extensions: 4535
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 4535
Number of HSP's successfully gapped: 5
Length of query: 59
Length of database: 17,035,801
Length adjustment: 31
Effective length of query: 28
Effective length of database: 15,417,167
Effective search space: 431680676
Effective search space used: 431680676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)